NACHO 0.6.0

Citation

• Add citation (#8).

New features

• autoplot() allows to plot a chosen QC plot available in the shiny app (visualise()) and/or
  in the HTML report (render()).
• print() allows to print the structure or to print text and figures formatted using markdown
  (mainly to be used in a Rmakrdown chunk).
• render() render figures from visualise() in a HTML friendly output.

Minor improvements and fixes

• In R/read_rcc.R, R/summarise.R,
  • fix issue (#1) when PlexSet RCC files could not be read.
  • update code to use tidyr 1.0.0 (#9).
• In R/summarise.R,
  • object returned is of S3 class "nacho" for ease of use of autoplot().
  • update code to use tidyr 1.0.0 (#9).
• In R/normalise.R,
  • object returned is of S3 class "nacho" for ease of use of autoplot().
  • fix missing outliers_thresholds component in returned object.
• In R/visualise.R,
  • minor code changes.
  • return app object in non-interactive session.
• In vignettes/NACHO.Rmd,
  • fix several typos.
  • add sections for autoplot(), print() and render() (#7).
  • fix chunk output (i.e., remove default results = "asis").
  • fix normalise() call with custom housekeeping genes (i.e., set housekeeping_predict = FALSE) (#10).