Initial cql and library for patient status prepopulation

mcode · Aug 30, 2023 · 06e9ef2 · 06e9ef2
1 parent 5311f16
commit 06e9ef2
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Showing 3 changed files with 174 additions and 10 deletions.
diff --git a/src/cds-library/CRD-DTR/Turalio/R4/files/TuralioProgressNotePrepopulation-0.1.0.cql b/src/cds-library/CRD-DTR/Turalio/R4/files/TuralioProgressNotePrepopulation-0.1.0.cql
@@ -0,0 +1,25 @@
+library TuralioProgressNotePrepopulation  version '0.1.0'
+using FHIR version '4.0.0'
+include FHIRHelpers version '4.0.0' called FHIRHelpers
+
+context Patient
+
+define "AllDiagnoses": ActiveConfirmedDiagnoses([Condition])
+
+define function ActiveConfirmedDiagnoses(CondList List<FHIR.Condition>):
+  distinct(
+    flatten(
+      CondList C
+        let DiagnosesCodings:
+          (C.code.coding) CODING where CODING.system.value in {
+            'http://hl7.org/fhir/sid/icd-10',
+            'http://hl7.org/fhir/sid/icd-10-cm',
+            'http://snomed.info/sct'
+          }
+          return FHIRHelpers.ToCode(CODING)
+        where C.verificationStatus.coding.code = 'confirmed'
+          and C.clinicalStatus.coding.code in {'active', 'relapse'}
+          and exists(DiagnosesCodings)
+        return DiagnosesCodings
+    )
+  )  
diff --git a/...-library/CRD-DTR/Turalio/R4/resources/Library-R4-Turalio-Progress-Note-prepopulation.json b/...-library/CRD-DTR/Turalio/R4/resources/Library-R4-Turalio-Progress-Note-prepopulation.json
@@ -0,0 +1,44 @@
+{
+    "resourceType": "Library",
+  "id": "TuralioProgressNote-prepopulation",
+  "url": "http://hl7.org/fhir/us/davinci-dtr/Library/TuralioProgressNote-prepopulation",
+  "name": "TuralioProgressNote-prepopulation",
+  "version": "0.1.0",
+  "title": "TuralioProgressNote Prepopulation",
+  "status": "draft",
+  "type": {
+    "coding": [
+      {
+        "code": "logic-library"
+      }
+    ]
+  },
+  "relatedArtifact": [
+    {
+      "type": "depends-on",
+      "resource": "Library/FHIRHelpers-4.0.0"
+    },
+    {
+      "type": "depends-on",
+      "resource": "Library/CDS_Connect_Commons_for_FHIRv400"
+    },
+    {
+      "type": "depends-on",
+      "resource": "Library/DTRHelpers"
+    }
+  ],
+  "dataRequirement": 
+  [
+   { "type": "TODO"}
+  ],
+  "content": [
+      {
+        "contentType": "text/cql",
+        "data": "TODO"
+      },
+      {
+        "contentType": "application/elm+json",
+        "data": "TODO"
+      }
+  ]
+}
diff --git a/src/cds-library/CRD-DTR/Turalio/R4/resources/Questionnaire-R4-Turalio-ProgressNote.json b/src/cds-library/CRD-DTR/Turalio/R4/resources/Questionnaire-R4-Turalio-ProgressNote.json
@@ -11,7 +11,7 @@
   "extension": [
     {
       "url": "http://hl7.org/fhir/StructureDefinition/cqf-library",
-      "valueCanonical": "http://hl7.org/fhir/us/davinci-dtr/Library/BasicClinicalInfo-prepopulation"
+      "valueCanonical": "http://hl7.org/fhir/us/davinci-dtr/Library/TuralioProgressNote-prepopulation"
     }
   ],
   "title": "Turalio Rems Patient Status",
@@ -61,7 +61,16 @@
       "type": "open-choice",
       "repeats": true,
       "required": true,
-      "answerOption": []
+      "answerOption": [],
+      "extension": [
+        {
+          "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+          "valueExpression": {
+            "language": "text/cql",
+            "expression": "\"TuralioProgressNotePrepopulation\".AllDiagnoses"
+          }
+        }
+      ]
     },
     {
       "linkId": "5",
@@ -74,18 +83,45 @@
           "text": "Transplants for Order",
           "type": "open-choice",
           "repeats": true,
-          "answerOption": []
+          "answerOption": [],
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "5.2",
           "text": "Date of transplant",
           "type": "date",
-          "required": true
+          "required": true,
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "5.3",
           "text": "Institution where transplant was performed",
-          "type": "string"
+          "type": "string",
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "5.4",
@@ -94,6 +130,13 @@
           "required": true,
           "answerValueSet": "http://terminology.hl7.org/ValueSet/yes-no-unknown-not-asked",
           "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            },
             {
               "url": "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl",
               "valueCodeableConcept": {
@@ -114,6 +157,13 @@
           "required": "true",
           "answerValueSet": "http://terminology.hl7.org/ValueSet/yes-no-unknown-not-asked",
           "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            },
             {
               "url": "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl",
               "valueCodeableConcept": {
@@ -223,27 +273,72 @@
         {
           "linkId": "9.1",
           "type": "text",
-          "text": "RxNorm Code"
+          "text": "RxNorm Code",
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "9.2",
           "type": "text",
-          "text": "Drug"
+          "text": "Drug",
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "9.3",
           "type": "text",
-          "text": "Route"
+          "text": "Route",
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "9.4",
           "type": "text",
-          "text": "Dose"
+          "text": "Dose",
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         },
         {
           "linkId": "9.5",
           "type": "text",
-          "text": "Frequency"
+          "text": "Frequency",
+          "extension": [
+            {
+              "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression",
+              "valueExpression": {
+                "language": "text/cql",
+                "expression": "\"TuralioProgressNotePrepopulation\".<TODO>"
+              }
+            }
+          ]
         }
       ]
     },