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Update EnvironmentVariables.md
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jtquach1 committed Jun 27, 2023
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# Environment variables
## Repositories
# Repositories and environment variables
## Repositories that define environment variables with default values
- mcode/REMS
* .env.example
+ VSAC_API_KEY
+ COMPOSE_PROJECT_NAME
+ PORTER_ALLOW_DOCKER_HOST_ACCESS
* dockerRunnerDev.sh
+ CONTINUOUS_BUILD_PID
+ SERVER_PID
+ `VSAC_API_KEY`: no default value
+ `COMPOSE_PROJECT_NAME`: `rems_dev`
+ `PORTER_ALLOW_DOCKER_HOST_ACCESS`: `true`
* docker-compose.yml
+ keycloak
- `KEYCLOAK_USER`: `admin`
- `KEYCLOAK_PASSWORD`: `admin`
- `DB_VENDOR`: `h2`
+ test-ehr
- `oauth_token`: `http://host.docker.internal:8180/auth/realms/ClientFhirServer/protocol/openid-connect/token`
+ crd-request-generator
- `REACT_APP_REMS_CONFIG`: `true`
+ rems-administrator
- `VSAC_API_KEY`: taken from host machine's value
- `MONGO_URL`: `mongodb://rems-user:pass@pims_remsadmin_mongo:27017`
+ pims_remsadmin_mongo
- `MONGO_INITDB_ROOT_USERNAME`: `rems-admin-pims-root`
- `MONGO_INITDB_ROOT_PASSWORD`: `rems-admin-pims-password`
+ pims
- `REMS_ADMIN_BASE`: `http://rems-administrator:8090`
- `MONGO_URL`: `mongodb://pims_remsadmin_mongo:27017/pims`
* docker-compose-dev.yml
+ keycloak
- `KEYCLOAK_USER`: `admin`
- `KEYCLOAK_PASSWORD`: `admin`
- `DB_VENDOR`: `h2`
+ test-ehr
- `oauth_token`: `http://host.docker.internal:8180/auth/realms/ClientFhirServer/protocol/openid-connect/token`
+ crd-request-generator
- `REACT_APP_REMS_CONFIG`: `true`
+ rems-administrator
- `VSAC_API_KEY`: taken from host machine's value
- `MONGO_URL`: `mongodb://rems-user:pass@pims_remsadmin_mongo:27017`
+ pims_remsadmin_mongo
- `MONGO_INITDB_ROOT_USERNAME`: `rems-admin-pims-root`
- `MONGO_INITDB_ROOT_PASSWORD`: `rems-admin-pims-password`
+ pims
- `REMS_ADMIN_BASE`: `http://rems-administrator:8090`
- `MONGO_URL`: `mongodb://pims_remsadmin_mongo:27017/pims`
- mcode/rems-smart-on-fhir
* .env
+ `REACT_APP_REMS_ADMIN_SERVER_BASE`: `http://localhost:8090`
+ `REACT_APP_REMS_HOOKS_PATH`: `/cds-services/rems-order-sign`
+ `REACT_APP_PHARMACY_SERVER_BASE`: `http://localhost:5051`
+ `REACT_APP_ETASU_STATUS_ENABLED`: `true`
+ `REACT_APP_PHARMACY_STATUS_ENABLED`: `true`
+ `PORT`: `4040`
- mcode/test-ehr
* src/main/resources/application.yml
+ `auth_base`: `http://localhost:8180/auth/realms/ClientFhirServer/protocol/openid-connect`
+ `ehr_base`: `http://localhost:8080/test-ehr`
+ `client_id`: `app-token`
+ `client_secret`: no default value
+ `realm`: `ClientFhirServer`
+ `use_oauth`: `false`
+ `oauth_token`: `${auth_base}/token`
+ `oauth_authorize`: `${auth_base}/auth`
+ `proxy_authorize`: `${ehr_base}/auth`
+ `proxy_token`: `${ehr_base}/token`
+ `redirect_post_launch`: `${ehr_base}/_services/smart/Launch`
+ `redirect_post_token`: `${ehr_base}/token`
+ `introspection_url`: `${auth_base}/token/introspect`
+ `redirect_base`: `${ehr_base}/_auth/`
* Dockerfile.keycloak
+ `KEYCLOAK_IMPORT`: `/resources/ClientFhirServerRealm.json`


## Repositories that use environment variables
- mcode/REMS
* src/config.ts
+ WHITELIST
+ PORT
+ SERVER_PORT
+ SMART_ENDPOINT
+ VSAC_API_KEY
+ MONGO_URL
+ MONGO_DB_NAME
+ RESOURCE_SERVER
+ PORT
+ SERVER_PORT
+ LOGGING_LEVEL
+ AUTH_SERVER_URI
+ `WHITELIST`
+ `PORT`
+ `SERVER_PORT`
+ `SMART_ENDPOINT`
+ `VSAC_API_KEY`
+ `MONGO_URL`
+ `MONGO_DB_NAME`
+ `RESOURCE_SERVER`
+ `LOGGING_LEVEL`
+ `AUTH_SERVER_URI`
- mcode/test-ehr
* dockerRunnerDev.sh
+ LOAD_DATA_PID
+ CONTINUOUS_BUILD_PID
+ SERVER_PID
* dockerRunnerProd.sh
+ LOAD_DATA_PID
+ SERVER_PID
* src/main/java/ca/uhn/fhir/jpa/starter/EnvironmentHelper.java
+ `elasticsearch.required_index_status`
+ `elasticsearch.schema_management_strategy`
+ `elasticsearch.debug.refresh_after_write`
+ `elasticsearch.debug.pretty_print_json_log`
+ `elasticsearch.rest_url`
+ `elasticsearch.protocol`
+ `elasticsearch.username`
+ `elasticsearch.password`
+ `elasticsearch.enabled`
+ `elasticsearch.enabled`
* src/main/java/org/hl7/davinci/ehrserver/ClientAuthorizationInterceptor.java
+ `use_oauth`
+ `client_secret`
+ `client_id`
+ `introspect_url`
* src/main/java/org/hl7/davinci/ehrserver/authproxy/AuthProxy.java
+ `oauth_authorize`
+ `oauth_token`
+ `redirect_base`


- mcode/crd-request-generator
* dockerRunnerDev.sh
+ CONTINUOUS_BUILD_PID
+ SERVER_PID
* src/registerServiceWorker.js
+ `NODE_ENV`
+ `PUBLIC_URL`
* src/containers/RequestBuilder.js
+ `REACT_APP_EHR_BASE`
+ `REACT_APP_EHR_SERVER`
* src/util/auth.js
+ `REACT_APP_AUTH`
+ `REACT_APP_REALM`
+ `REACT_APP_USER`
+ `REACT_APP_PASSWORD`
+ `REACT_APP_CLIENT`
+ `REACT_APP_PUBLIC_KEYS`
* src/util/data.js
+ `REACT_APP_EHR_SERVER`
+ `REACT_APP_CDS_SERVICE`
+ `REACT_APP_ORDER_SELECT`
+ `REACT_APP_ORDER_SIGN`
+ `REACT_APP_AUTH`
+ `REACT_APP_ALTERNATIVE_THERAPY`
+ `LAUNCH_URL`
+ `FORM_EXPIRATION_DAYS`
+ `PIMS_URL`
* src/util/fhir.js
+ `REACT_APP_AUTH`
+ `REACT_APP_REALM`
+ `REACT_APP_CLIENT`
- mcode/dtr
* dockerRunnerDev.sh
+ CONTINUOUS_BUILD_PID
+ SERVER_PID
* bin/prod
+ `REACT_APP_SERVER_PORT`
+ `REACT_APP_INITIAL_CLIENT`
* bin/template
+ `REACT_APP_SERVER_PORT`
+ `REACT_APP_INITIAL_CLIENT`
* src/backend/routes/metadata.js
+ `FHIR_VERSION`
* bin/www
+ `PORT`
* src/elmExecutor/buildPopulatedResourceBundle.js
+ `REACT_APP_EPIC_SUPPORTED_QUERIES`
- mcode/pims
* dockerRunnerDev.sh
+ CONTINUOUS_BUILD_PID
+ SERVER_PID
* src/backend/server.js
+ BACKEND_PORT
+ ALLOWED_ORIGIN
+ MONGO_HOSTNAME
+ AUTH_SOURCE
+ MONGO_USERNAME
+ MONGO_PASSWORD
+ `BACKEND_PORT`
+ `ALLOWED_ORIGIN`
+ `MONGO_HOSTNAME`
+ `AUTH_SOURCE`
+ `MONGO_USERNAME`
+ `MONGO_PASSWORD`
* src/backend/server.ts
+ PORT
+ ALLOWED_ORIGIN
+ MONGO_HOSTNAME
+ AUTH_SOURCE
+ MONGO_USERNAME
+ MONGO_PASSWORD
+ `PORT`
+ `ALLOWED_ORIGIN`
+ `MONGO_HOSTNAME`
+ `AUTH_SOURCE`
+ `MONGO_USERNAME`
+ `MONGO_PASSWORD`
* src/backend/routes/doctorOrders.js
+ REMS_ADMIN_BASE
- mcode/rems-smart-on-fhir
* dockerRunnerDev.sh
+ CONTINUOUS_BUILD_PID
+ SERVER_PID

# Secrets
## Repositories
- mcode/REMS
* .github/workflows/docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
- mcode/test-ehr
* .github/workflows/docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/keycloak-docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/keycloak-docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
- mcode/crd-request-generator
* .github/workflows/docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
- mcode/dtr
* .github/workflows/docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
- mcode/pims
* .github/workflows/docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
+ `REMS_ADMIN_BASE`
* frontend/src/App.tsx
+ `REACT_APP_PIMS_BACKEND_URL`
+ `REACT_APP_PIMS_BACKEND_PORT`
- mcode/rems-smart-on-fhir
* .github/workflows/docker-cd.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* .github/workflows/docker-cd-dev.yml
+ secrets.DOCKER_USERNAME
+ secrets.DOCKER_TOKEN
* src/views/Patient/MedReqDropDown/MedReqDropDown.tsx
+ `REACT_APP_REMS_ADMIN_SERVER_BASE`
* src/views/Patient/MedReqDropDown/etasuStatus/EtasuStatus.tsx
+ `REACT_APP_REMS_ADMIN_SERVER_BASE`
* src/views/Patient/MedReqDropDown/pharmacyStatus/PharmacyStatus.tsx
+ `REACT_APP_REMS_ADMIN_SERVER_BASE`

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