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basic cellchat version, needs to be updated
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mcrewcow authored Feb 7, 2023
1 parent ac055f3 commit f919e91
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2 changes: 1 addition & 1 deletion cellchat.R
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ CellC <- function(cellchat){
cellchat <- identifyOverExpressedGenes(cellchat)
cellchat <- identifyOverExpressedInteractions(cellchat)
cellchat <- computeCommunProb(cellchat)
# Filter out the cell-cell communication if there are only few number of cells in certain cell groups
# Filter out the cell-cell communication if there are only few number of cells in certain cell groups #add the parameters for ProjectPPI and computeCommun
cellchat <- filterCommunication(cellchat, min.cells = 10)
cellchat <- computeCommunProbPathway(cellchat)
cellchat <- aggregateNet(cellchat)
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