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1. raphael-group/hotnet2 raphael-group/hotnet2 Public

   HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

   Python 100 43

2. raphael-group/wext raphael-group/wext Public

   A Weighted Exact Test for Mutually Exclusive Mutations in Cancer

   Python 21 5

3. raphael-group/magi raphael-group/magi Public

   A web application from the Raphael Lab for mutation annotation and genome interpretation.

   JavaScript 20 5

4. lrgr/munk lrgr/munk Public

   A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks

   Python 9 2

5. lrgr/multifactorial-immune-response lrgr/multifactorial-immune-response Public

   Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features

   Python 14 6

6. lrgr/sigma lrgr/sigma Public

   SigMa is a probabilistic model for the sequential dependencies of mutation signatures

   Python 17 7