- Clustering now uses cosine-like (via l2-normalization) distances (as in https://www.nature.com/articles/s41564-022-01110-2)
- pHMM databases have been updated to PFAM 35.0
- BGC class definition has been updated to antiSMASH v7.0.0
- Switching from HMMER to pyHMMER (speed-ups, can now be fully installed via pip)
- General speed improvement
- Ability to export pre-calculated BGCs and GCFs table into TSVs (use --export-csv parameter)