0.3.1 - Bugfix Release for Projectathon 7

This release fixes issues in the previous 0.3.0 release and should be used in the Projection 7.

General remarks:

• This release is compatible with the Data Sharing Framework version 0.9.0. This release does not work with older versions of the DSF
• The required DSF Allow-List resources for DIC, COS and HRP organizations will be distributed internally
• To Update an existing DSF 0.7.0 installation, please see the 0.7.0 -> 0.8.0 Upgrade Guide
• To Update an existing DSF 0.8.0 installation, please see the 0.8.0 -> 0.9.0 Upgrade Guide
• A guide for a fresh DSF 0.9.0 installation for non HiGHmed organizations can be found here: DSF NUM-CODEX Deployment
• A guide for a fresh DSF 0.9.0 installation for HiGHmed organizations can be found here: DSF HiGHmed Deployment

Bugs fixed:

• If the merge-data-sharing process fails while downloading a data-set from a DIC or inserting the data-set into the DMS, the Task resources finishes now in the state failed. Additionally, the Task resource should contains the error as Task.output.

Issues closed:

• Set Task.status=failed if merge-data-sharing process fails #23

Processes released in the binary assets and GitHub Packages Maven Registry:

• Process Data-Sharing: mii-dsf-process-projectathon-data-sharing-0.3.1.jar
• Process Data-Transfer:mii-dsf-process-projectathon-data-transfer-0.3.1.jar
• Process KDS Report: mii-dsf-process-kds-report-0.3.1.jar

Links to wiki resources:

Process Projectathon Data-Sharing:

• A detailed description of the process can be found here: Data-Sharing Description v0.3.1
• The deployment instructions of the process can be found here: Data-Sharing Deployment v0.3.1
• The configuration guide of the process can be found here: Data-Sharing Configuration v0.3.1
• A guide on how to prepare the DIC KDS FHIR store before answering a manual user task and how to start the data-sharing coordinate process at a HRP is described here: Data-Sharing Preparation & Start v0.3.1

Process Data-Transfer:

• A detailed description of the process can be found here: Data-Transfer Description v0.3.1
• The deployment instructions of the process can be found here: Data-Transfer Deployment v0.3.1
• The configuration guide of the process can be found here: Data-Transfer Configuration v0.3.1
• A guide on how to prepare the DIC KDS FHIR store and how to start the data-transfer send process at a DIC is described here: Data-Transfer Preparation & Start v0.3.1

Process KDS Report:

• A detailed description of the process can be found here: KDS Report Description v0.3.1
• The deployment instructions of the process can be found here: KDS Report Deployment v0.3.1
• The configuration guide of the process can be found here: KDS Report Configuration v0.3.1
• A guide on how to prepare the HRP DSF FHIR server as well as how to start/stop the KDS report autostart process and to start the KDS report send process at a DIC is described here: KDS Report Preparation & Start v0.3.1

0.3.0 - Projectathon 7

This release contains a bug and is not anymore supported in the Projectathon 7, use release 0.3.1 instead!

Third Release of processes to be used in the Medical Informatics Initiative (MII). With this release, a new process data-sharing process is published for usage in the Projectathon 7. The processes for data-transfer and the KDS report were updated to DSF version 0.9.0.

General remarks:

• This release is compatible with the Data Sharing Framework version 0.9.0. This release does not work with older versions of the DSF
• The required DSF Allow-List resources for DIC, COS and HRP organizations will be distributed internally
• To Update an existing DSF 0.7.0 installation, please see the 0.7.0 -> 0.8.0 Upgrade Guide
• To Update an existing DSF 0.8.0 installation, please see the 0.8.0 -> 0.9.0 Upgrade Guide
• A guide for a fresh DSF 0.9.0 installation for non HiGHmed organizations can be found here: DSF NUM-CODEX Deployment
• A guide for a fresh DSF 0.9.0 installation for HiGHmed organizations can be found here: DSF HiGHmed Deployment

Features include:

• A new data-sharing process has been developed and can be used in the Projectathon 7 for data-usage and distributed analysis projects.
• The KDS report autostart process has been reworked. When started the autostart process will signal all existing process instances to stop executing.
• The KDS report search bundle validation now allows date search parameters. KDS reports can now reflect resource counts of each year.

Bugs fixed:

• When using Blaze as FHIR store, the CapabilityStatement was twice part of the KDS report. One entry was correct and the other had a 400 HTTP code. The entry with the 400 HTTP code is now removed.

Issues closed:

• Create a data-sharing process for the Projectathon 7 #16
• KDS report of Blaze FHIR server contains erroneous CapabilityStatement #17
• KDS report should allow date search parameters #18
• Use SignalEvent to remove old KDS Autostart Process Instances #20

Processes released in the binary assets and GitHub Packages Maven Registry:

• Process Data-Sharing: mii-dsf-process-projectathon-data-sharing-0.3.0.jar
• Process Data-Transfer:mii-dsf-process-projectathon-data-transfer-0.3.0.jar
• Process KDS Report: mii-dsf-process-kds-report-0.3.0.jar

Links to wiki resources:

Process Projectathon Data-Sharing:

• A detailed description of the process can be found here: Data-Sharing Description v0.3.0
• The deployment instructions of the process can be found here: Data-Sharing Deployment v0.3.0
• The configuration guide of the process can be found here: Data-Sharing Configuration v0.3.0
• A guide on how to prepare the DIC KDS FHIR store before answering a manual user task and how to start the data-sharing coordinate process at a HRP is described here: Data-Sharing Preparation & Start v0.3.0

Process Data-Transfer:

• A detailed description of the process can be found here: Data-Transfer Description v0.3.0
• The deployment instructions of the process can be found here: Data-Transfer Deployment v0.3.0
• The configuration guide of the process can be found here: Data-Transfer Configuration v0.3.0
• A guide on how to prepare the DIC KDS FHIR store and how to start the data-transfer send process at a DIC is described here: Data-Transfer Preparation & Start v0.3.0

Process KDS Report:

• A detailed description of the process can be found here: KDS Report Description v0.3.0
• The deployment instructions of the process can be found here: KDS Report Deployment v0.3.0
• The configuration guide of the process can be found here: KDS Report Configuration v0.3.0
• A guide on how to prepare the HRP DSF FHIR server as well as how to start/stop the KDS report autostart process and to start the KDS report send process at a DIC is described here: KDS Report Preparation & Start v0.3.0

0.2.0 - KDS Report

Second Release of processes to be used in the Medical Informatics Initiative (MII). With this release, a new process is published to generate and submit status reports on the implementation of the MII core dataset (KDS) to the Health Research Data Platform (FDPG). The process used in the Projectathon 6 for Data Transfer was updated to DSF version 0.7.0.

An installation guide of the DSF 0.7.0 for non HiGHmed organizations can be found here: DSF Wiki NUM-CODEX Deployment.
An installation guide of the DSF 0.7.0 for HiGHmed organizations can be found here: DSF Wiki HiGHmed Deployment.

The required DSF Allow-List resources for DIC and COS organizations will be distributed internally.

Process KDS Report:
A detailed description of the process can be found here: KDS Report Description v0.2.0.
The deployment instructions of the process can be found here: KDS Report Deployment v0.2.0.
The configuration guide of the process can be found here: KDS Report Configuration v0.2.0.

Process Projectathon Data Transfer:
A detailed description of the process can be found here: Projectathon Data Transfer Description v0.2.0.
The deployment instructions of the process can be found here: Projectathon Data Transfer Deployment v0.2.0.
The configuration guide of the process can be found here: Projectathon Data Transfer Configuration v0.2.0.

0.1.0 - Projectathon 6

First Release of a MII Data Transfer Process to be used in the MII Projectathon 6 in order to send data from a Data Integration Center (DIC) to a Coordinating Site (COS, also called Data Management Site).

An installation guide of the DSF 0.5.5 for non HiGHmed organizations can be found here: DSF Wiki NUM-CODEX Deployment.
An installation guide of the DSF 0.5.5 for HiGHmed organizations can be found here: DSF Wiki HiGHmed Deployment.

The required DSF Allow-List resources for DIC and COS organizations will be distributed internally by the Projectathon 6 organizers.

A detailed description of the process can be found here: Projectathon Data Transfer Description v0.1.0.
The deployment instructions of the process can be found here: Projectathon Data Transfer Deployment v0.1.0.
The configuration guide of the process can be found here: Projectathon Data Transfer Configuration v0.1.0.

0.1.0-RC1 - First Release Candidate

First Release Candidate of a MII Data Transfer Process to be used in Projectathons in order to send data from a Data Integration Center (DIC) to a Coordinating Site (COS, also called Data Management Site).

An installation guide of the DSF 0.5.4 for non HiGHmed organizations can be found here: DSF Wiki NUM-CODEX Deployment.
An installation guide of the DSF 0.5.4 for HiGHmed organizations can be found here: DSF Wiki HiGHmed Deployment.

The required DSF Allow-List resources for DIC and COS organizations will be distributed internally by the Projectathon organizers.

A detailed description of the process can be found here: Projectathon Data Transfer Description v0.1.0.
The deployment instructions of the process can be found here: Projectathon Data Transfer Deployment v0.1.0.
The configuration guide of the process can be found here: Projectathon Data Transfer Configuration v0.1.0.

The DSF process-plugin can be found here: mii-process-projectathon-data-transfer-0.1.0-RC1.zip. To deploy the process-plugin, add the unzipped folder to the process configuration folder of your DSF BPE instance. This process-plugin requires a hapi-fhir-client-5.1.0.jar to be installed as a regular DSF BPE plugin (add to plugin configuration folder).

Example Task Resources to start the send process can be found here: Projectathon Data Transfer Task Resources.
Transaction Bundles with example DocumentReference and Binary Resources can be found here: Projectathon Data Transfer Bundle Resources.