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meekrob/README.md

Hi there 👋

⚡ Fun fact: My background is in bioinformatics and computational biology.

What I do

I currently work at Colorado State University as a researcher in the Erin Osborne Nishimura laboratory.

I am also the course coordinator for Quantitative Cell and Molecular Biology, an introductory course on bioinformatics subjects and techniques geared toward first year PhD students.

Interesting projects

Interactive MA-plot and viewer for RNA-seq data

Screenshot demo

ELT-2 ChIP-seq and RNA-seq study

Meta-analysis of transcription factor binding sites in C. elegans: https://github.com/meekrob/ELT2-metanalysis

Animation

Python code to convert C. elegans development nuclei-tracking data into Blender models with animation.

Screenshot mid-video

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  1. dash-ma-plot dash-ma-plot Public

    An interactive MA-plot app for RNA-seq data

    Python

  2. Colorado-State-University-CMB/CM515-course-2024 Colorado-State-University-CMB/CM515-course-2024 Public

    Course material for CM515, Spring 2024

    Jupyter Notebook 5 19