Environment settings for workshops in Algorithms in Bioinformatics
Open a Binder session using the environment settings from this repo.
If working on this repo from a Gitpod workspace dependancies from the Dockerfile should be automatically installed
and enabled in the base conda environment along with any packages listed in requirements.txt.
You will need to conda install any non-pip packages.
# Increase gitpod timeout setting
gp timeout set 6h
# Launch jupyter-lab
jupyter lab --NotebookApp.allow_origin='*' --NotebookApp.allow_remote_access=True
# or Launch jupyter-notebook
jupyter notebook --NotebookApp.allow_origin='*' --NotebookApp.allow_remote_access=True
The notebook will be available on port 8888 by default. You can open this port using the link in the Ports tab above the terminal.
If prompted for a password or token find the line that looks like this in your terminal and copy the token:
http://localhost:8888/tree?token=51b713c73bad3c2cf19b43b91007ec7dc651b47cbcedd865
Note: See other gitpod settings here.