Merge pull request #7 from david-c-miller/development

Development

.gitignore

@@ -1,32 +1,27 @@
+*~
+*.tar.gz
+
 # Compiled Object files
-*.slo
-*.lo
 *.o
-*.obj
-
-# Precompiled Headers
-*.gch
-*.pch
-
-# Compiled Dynamic libraries
-*.so
-*.dylib
-*.dll
-
-# Fortran module files
-*.mod
-*.smod
-
-# Compiled Static libraries
-*.lai
-*.la
 *.a
-*.lib
-
-# Executables
-*.exe
-*.out
-*.app
 
+# Binary related files
+gmon.out
 bin/*
-test-output/*
+
+# autoconf/automake files
+.deps
+.dirstamp
+aclocal.m4
+autom4te.cache
+config.log
+config.status
+compile
+configure
+depcomp
+install-sh
+INSTALL
+Makefile
+Makefile.in
+missing
+

COPYING

@@ -0,0 +1 @@
+/usr/share/automake-1.15/COPYING

Makefile.am

@@ -0,0 +1,80 @@
+SUFFIXES = .c .h
+
+WARN_FLAGS = -Wall -Wextra -pedantic $(WARN_EXTRA)
+L_FLAGS = -lm
+
+AM_CFLAGS = $(WARN_FLAGS) -std=c99
+LDADD = $(L_FLAGS)
+
+bin_PROGRAMS = bin/generateTMDSuperCell
+bin_generateTMDSuperCell_SOURCES = src/generateTMDSuperCell.c src/tmd_functions.c src/printing.c\
+	src/fractional.c src/atomic_sites.c src/structure.c\
+	src/testing.c src/elements.h src/header.h
+
+
+debug:
+	make clean; make "CFLAGS=$(AM_CFLAGS) $(ERROR_FLAG) $(O_FLAG_0)";
+
+optim:
+	make clean; make "CFLAGS=$(AM_CFLAGS) $(O_FLAG_3)";
+
+.PHONY : debug optim
+
+#extra flags
+
+O_FLAG_0 = -g3 -pg -O0 
+O_FLAG_1 = -g1 -pg -O1 
+O_FLAG_2 = -O2
+O_FLAG_3 = -O3
+
+WARN_EXTRA = \
+-Wfloat-equal\
+-Wunused\
+-Wunknown-pragmas\
+-Wwrite-strings\
+-Winit-self\
+-Wcast-align\
+-Wcast-qual\
+-Wpointer-arith\
+-Wstrict-aliasing\
+-Wmissing-declarations\
+-Wmissing-include-dirs\
+-Wno-unused-parameter\
+-Wuninitialized\
+-Wcast-align\
+-Wcast-qual\
+-Wdisabled-optimization\
+-Wformat=2\
+-Wredundant-decls\
+-Wshadow\
+-Wstrict-overflow=4\
+-Wswitch-default\
+-Wundef\
+-Wno-unused\
+-Wsign-conversion\
+-Wmissing-format-attribute\
+-Wtype-limits\
+-Wconversion\
+-Wsign-compare\
+-Wmissing-field-initializers\
+-Wno-multichar\
+-Winline\
+$(GCC_WARN_EXTRA)
+
+GCC_WARN_EXTRA=\
+-Wsuggest-attribute=pure\
+-Wsuggest-attribute=const\
+-Wsuggest-attribute=noreturn\
+-Wlogical-op
+
+GCC_NEW_WARN_EXTRA=\
+-Wmaybe-uninitialized\
+-Wsuggest-attribute=format\
+-Wnarrowing
+
+ERROR_FLAG=\
+-Werror\
+-Wno-error=unused-parameter\
+-Wno-error=unused-variable\
+-Wno-error=pedantic
+