CPIExtract: A software package to collect and harmonize small molecule and protein interactions

First release of CPIExtract (Compound-Protein Interaction Extract)

The binding interactions between small molecules and proteins are the basis of cellular functions. Yet, experimental data available regarding compound-protein interaction (CPI) is not harmonized into a single entity but rather scattered across multiple institutions, each maintaining databases with different formats. Extracting information from these multiple sources remains challenging due to data heterogeneity.
CPIExtract interactively extracts, filters, and harmonizes CPI data from 9 databases, providing the output in tabular format (csv).

Python package available here: https://pypi.org/project/cpiextract/0.1.0/