📝 Add docstrings to feat/minimal-dpoi-qca-loop

[coderabbitai]

Docstrings generation was requested by @flyingrobots.

• feat/minimal dpoi qca loop #70 (comment)

The following files were modified:

• include/metagraph/epoch.h
• src/arena.c
• src/dpoi.c
• src/error.c
• src/graph.c
• src/hilbert.c
• src/match.c
• src/qca.c
• src/rmg.c
• src/rule.c

These files were ignored

• tests/dpoi_qca_rmg_test.c

These file types are not supported

• .clang-tidy
• AGENTS.md
• docs/dpoi-qca-integration-plan.md
• docs/features/F013-dpoi-qca-dynamics.md
• docs/features/README.md
• docs/roadmap/dpoi-qca-integration-issue.md
• docs/roadmap/dpoi-qca-phase0.md
• docs/roadmap/dpoi-qca-phase1.md
• docs/roadmap/dpoi-qca-phase2.md
• docs/roadmap/dpoi-qca-phase3.md
• docs/roadmap/dpoi-qca-phase4.md
• docs/roadmap/dpoi-qca-phase5.md
• docs/roadmap/dpoi-qca-tracker.md
• src/CMakeLists.txt
• tests/CMakeLists.txt

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[flyingrobots]

@coderabbitai can you resolve the merge conflicts?

[coderabbitai]

Tip

For best results, initiate chat on the files or code changes.

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
# Check the PR status and get information about merge conflicts
gh pr view 71 --json mergeable,mergeStateStatus,headRefName,baseRefName

# Get the list of files with conflicts
git fetch origin
git checkout feat/minimal-dpoi-qca-loop
git merge origin/main --no-commit --no-ff 2>&1 || true

# Show which files have conflicts
git status --short

# Show the conflicts in detail
git diff --name-only --diff-filter=U

Length of output: 249

---

🏁 Script executed:

#!/bin/bash
# Fetch all branches
git fetch origin

# Check out the PR branch (head branch)
git checkout -b pr-branch origin/coderabbitai/docstrings/77d8c6e

# Try to merge the base branch to see conflicts
git merge origin/feat/minimal-dpoi-qca-loop --no-commit --no-ff 2>&1 || true

# Show which files have conflicts
echo "=== Files with conflicts ==="
git diff --name-only --diff-filter=U

# Show the actual conflicts
echo "=== Conflict details ==="
for file in $(git diff --name-only --diff-filter=U); do
  echo "--- Conflicts in $file ---"
  git diff "$file"
  echo ""
done

Length of output: 238

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🏁 Script executed:

#!/bin/bash
# Use GitHub CLI to checkout the PR
gh pr checkout 71

# Show current branch
git branch --show-current

# Get the base branch name
BASE_BRANCH=$(gh pr view 71 --json baseRefName -q .baseRefName)
echo "Base branch: $BASE_BRANCH"

# Fetch the base branch
git fetch origin "$BASE_BRANCH"

# Try to merge the base branch to see conflicts
git merge "origin/$BASE_BRANCH" --no-commit --no-ff 2>&1 || true

# Show which files have conflicts
echo "=== Files with conflicts ==="
git diff --name-only --diff-filter=U

# Show the actual conflicts in each file
for file in $(git diff --name-only --diff-filter=U); do
  echo ""
  echo "=========================================="
  echo "Conflicts in: $file"
  echo "=========================================="
  cat "$file"
done

Length of output: 539

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🏁 Script executed:

#!/bin/bash
# Check current status
echo "=== Current branch and status ==="
git branch -a
git status

# Let's try a different approach - get PR files directly
echo ""
echo "=== PR diff from GitHub ==="
gh pr diff 71

# Get the list of changed files
echo ""
echo "=== Changed files in PR ==="
gh pr view 71 --json files -q '.files[].path'

# Check what base branch commits have that the PR doesn't
echo ""
echo "=== Commits in base not in PR ==="
gh api repos/meta-graph/core/compare/coderabbitai/docstrings/77d8c6e...feat/minimal-dpoi-qca-loop --jq '.commits[] | .sha + " " + .commit.message'

Length of output: 37916

---

@flyingrobots, I cannot directly resolve merge conflicts on this PR as it's one of my own pull requests and I'm unable to commit code changes to the repository.

The conflict situation is that the base branch feat/minimal-dpoi-qca-loop has moved forward with 6 new commits since this PR was opened:

1. 3e69a21 - feat: add phase 1 scaffolding and clang tidy job
2. 818908a - fix: address review feedback for phase 1 scaffolding
3. 0be5885 - fix: retain test assertions in release builds
4. 6f961a4 - fix: align rule edge copies with destination width
5. ef28cbf - chore: sync docs and tooling per review
6. a21e7be - docs: clarify ownership and workflow guidance

Resolution Options

You have a few options to resolve this:

1. Rebase the PR branch (recommended):

   git checkout coderabbitai/docstrings/77d8c6e
   git fetch origin feat/minimal-dpoi-qca-loop
   git rebase origin/feat/minimal-dpoi-qca-loop
   git push --force-with-lease

2. Merge the base branch into the PR:

   git checkout coderabbitai/docstrings/77d8c6e
   git merge origin/feat/minimal-dpoi-qca-loop
   git push

3. Close this PR and create a new one with the docstring changes applied to the current state of the base branch.

The good news is that from the diff analysis, the changes in this PR (docstring additions) shouldn't have direct conflicts with the new commits in the base branch - it's mainly that the PR branch is behind and needs to be updated.

Would you like me to help with any of these approaches, or would you prefer to handle the resolution manually?