Merge pull request #35 from metagenlab/readproc #59
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - ".github/workflows/unit-tests.yml" | |
| - "tests/**" | |
| - "mess/**" | |
| - "setup.py" | |
| - "!.github/workflows/build-docs.yml" | |
| - "!docs/**" | |
| - "!mkdocs.yml" | |
| - "!README.md" | |
| pull_request: | |
| paths: | |
| - ".github/workflows/unit-tests.yml" | |
| - "tests/**" | |
| - "mess/**" | |
| - "setup.py" | |
| - "!.github/workflows/build-docs.yml" | |
| - "!docs/**" | |
| - "!mkdocs.yml" | |
| - "!README.md" | |
| permissions: | |
| contents: read | |
| jobs: | |
| tests: | |
| name: "Python ${{ matrix.python-version }} on ${{ matrix.os }}" | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup apptainer | |
| uses: eWaterCycle/setup-apptainer@v2.0.0 | |
| - name: Setup MeSS environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| activate-environment: mess | |
| python-version: ${{ matrix.python-version }} | |
| auto-update-conda: true | |
| - name: Install MeSS and pytest-cov | |
| run: | | |
| pip install -e . | |
| pip install pytest coverage | |
| - name: Run tests on ${{ matrix.os }} for python ${{ matrix.python-version }} | |
| run: | | |
| coverage run -m pytest |