correct path in get_assembly_function #173
Workflow file for this run
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name: Python Package using Conda | |
on: [push] | |
jobs: | |
build-linux: | |
runs-on: ubuntu-latest | |
strategy: | |
max-parallel: 5 | |
defaults: | |
run: | |
shell: bash -el {0} # use default shell | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3.5.2 | |
- name: Setup_conda_and_cache | |
uses: actions/cache@v2 | |
env: | |
# Increase this value to reset cache if etc/example-environment.yml has not changed | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
hashFiles('atlasenv.yml') }} | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: atlasenv | |
use-mamba: true | |
python-version: 3.11 | |
mamba-version: "*" | |
channels: conda-forge,bioconda,defaults | |
environment-file: atlasenv.yml | |
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
- name: Install atlas | |
run: | | |
echo "You are using env '$CONDA_PREFIX'" | |
python -m pip install . --no-deps -vv | |
- name: Test atlas | |
run: | | |
atlas --help | |
atlas --version | |
- name: Import atlas | |
run: | | |
python -c "from atlas import utils" | |
- name: Dryrun | |
run: | | |
test/dryrun.sh | |