megahit uses now mem_mb

metagenome-atlas · Oct 10, 2023 · 345eee2 · 345eee2
1 parent 0da5cc4
commit 345eee2
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/assemble.smk b/workflow/rules/assemble.smk
@@ -332,7 +332,7 @@ if config.get("assembler", "megahit") == "megahit":
             --merge-level {params.merge_level} \
             --prune-level {params.prune_level} \
             --low-local-ratio {params.low_local_ratio} \
-            --memory {resources.mem}000000  \
+            --memory {resources.mem_mb}000000  \
             {params.preset} >> {log} 2>&1
             """