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--- | ||
name: Feature request | ||
about: Suggest an idea for this project | ||
title: '' | ||
labels: Feature request | ||
assignees: '' | ||
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--- | ||
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**Is your feature request related to a problem? Please describe.** | ||
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] | ||
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**Describe the solution you'd like** | ||
A clear and concise description of what you want to happen. | ||
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**Additional context** | ||
Add any other context or screenshots about the feature request here. |
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name: Python Package using Conda | ||
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on: [push] | ||
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jobs: | ||
build-linux: | ||
runs-on: ubuntu-latest | ||
strategy: | ||
max-parallel: 5 | ||
defaults: | ||
run: | ||
shell: bash -el {0} # use default shell | ||
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steps: | ||
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- name: Checkout | ||
uses: actions/checkout@v3.5.2 | ||
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- name: Setup_conda_and_cache | ||
uses: actions/cache@v2 | ||
env: | ||
# Increase this value to reset cache if etc/example-environment.yml has not changed | ||
CACHE_NUMBER: 0 | ||
with: | ||
path: ~/conda_pkgs_dir | ||
key: | ||
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | ||
hashFiles('atlasenv.yml') }} | ||
- uses: conda-incubator/setup-miniconda@v2 | ||
with: | ||
activate-environment: atlasenv | ||
use-mamba: true | ||
python-version: 3.11 | ||
mamba-version: "*" | ||
channels: conda-forge,bioconda,defaults | ||
environment-file: atlasenv.yml | ||
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | ||
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- name: Install atlas | ||
run: | | ||
echo "You are using env '$CONDA_PREFIX'" | ||
python -m pip install . --no-deps -vv | ||
- name: Test atlas | ||
run: | | ||
atlas --help | ||
atlas --version | ||
- name: Import atlas | ||
run: | | ||
python -c "from atlas import utils" | ||
- name: Dryrun | ||
run: | | ||
test/dryrun.sh | ||
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# This workflow warns and then closes issues and PRs that have had no activity for a specified amount of time. | ||
# | ||
# You can adjust the behavior by modifying this file. | ||
# For more information, see: | ||
# https://github.com/actions/stale | ||
name: Mark stale issues and pull requests | ||
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on: | ||
schedule: | ||
- cron: '16 13 * * *' | ||
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jobs: | ||
stale: | ||
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runs-on: ubuntu-latest | ||
permissions: | ||
issues: write | ||
pull-requests: write | ||
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steps: | ||
- uses: actions/stale@v7 | ||
with: | ||
repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
stale-issue-message: | | ||
There was no activity since some time. I hope your issue is solved in the mean time. | ||
This issue will automatically close soon if no further activity occurs. | ||
Thank you for your contributions. | ||
stale-pr-message: | | ||
This PR is stale because it has not had any recent activity. | ||
This PR will automatically close soon if no further activity occurs. | ||
Thank you for your contributions. | ||
days-before-stale: 60 | ||
days-before-close: 15 | ||
stale-issue-label: stale | ||
stale-pr-label: stale | ||
exempt-issue-labels: 'keep,enhancement,bug,documentation,Feature-request,Known-issue' | ||
exempt-pr-labels: '' | ||
days-before-pr-stale: 1000 | ||
exempt-assignees: silask |
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