add include file and instruction for NLTRAN data items #15
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| name: Torsten Model tests | |
| on: | |
| pull_request: | |
| branches: [ develop, master ] | |
| push: | |
| branches: [ develop, master, workflow ] | |
| paths-ignore: | |
| - 'doygen/**' | |
| - 'hooks/**' | |
| - 'licenses/**' | |
| - 'LICENSE.md' | |
| - 'README.md' | |
| - 'RELEASE-NOTES.txt' | |
| workflow_dispatch: | |
| inputs: | |
| branch: | |
| description: 'The branch to build' | |
| required: true | |
| default: 'develop' | |
| jobs: | |
| nix: | |
| name: ubuntu/macos tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master' && github.ref != 'refs/heads/develop'" | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Print g++ & make version and path | |
| shell: bash | |
| run: | | |
| g++ --version | |
| make --version | |
| - name: Add TBB to PATH | |
| shell: bash | |
| run: echo "./cmdstan/stan/lib/stan_math/lib/tbb" >> $GITHUB_PATH | |
| - name: Add Torsten to PATH | |
| shell: bash | |
| run: echo "./cmdstan/stan/lib/stan_math/stan/math/torsten" >> $GITHUB_PATH | |
| - name: Build Torsten example model pk2cpt | |
| working-directory: ./cmdstan | |
| shell: bash | |
| run: | | |
| make -j2 ../example-models/pk2cpt/pk2cpt | |
| - name: Run Torsten example model pk2cpt | |
| working-directory: ./example-models/pk2cpt | |
| shell: bash | |
| run: | | |
| ./pk2cpt sample data file=pk2cpt.data.R init=pk2cpt.init.R | |
| - name: Upload Torsten example model output pk2cpt | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.os }}-output | |
| path: './example-models/pk2cpt/output.csv' | |
| # win: | |
| # name: windows tests | |
| # runs-on: windows-latest | |
| # steps: | |
| # - uses: actions/checkout@v4 | |
| # - uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: '3.x' | |
| # - uses: r-lib/actions/setup-r@v2 | |
| # with: | |
| # r-version: 4.1.3 | |
| # - name: Set path for Rtools40 | |
| # if: runner.os == 'Windows' | |
| # run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8 | |
| # - name: Install mingw32-make and check toolchain path | |
| # if: runner.os == 'Windows' | |
| # run: | | |
| # pacman -Syu mingw-w64-x86_64-make --noconfirm | |
| # g++ --version | |
| # Get-Command g++ | Select-Object -ExpandProperty Definition | |
| # mingw32-make --version | |
| # Get-Command mingw32-make | Select-Object -ExpandProperty Definition | |
| # shell: powershell | |
| # - name: Add TBB to PATH | |
| # shell: powershell | |
| # run: echo "D:/a/Torsten/Torsten/cmdstan/stan/lib/stan_math/lib/tbb" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8 | |
| # - name: Add Torsten to PATH | |
| # shell: powershell | |
| # run: echo "D:/a/Torsten/Torsten/cmdstan/stan/lib/stan_math/stan/math/torsten" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8 | |
| # - name: Build Torsten example model pk2cpt | |
| # shell: powershell | |
| # run: python runTests.py -j2 stan/math/torsten/test/unit -f stan/math/torsten/test/unit | |
| # - name: Upload gtest_output xml | |
| # uses: actions/upload-artifact@v4 | |
| # if: failure() | |
| # with: | |
| # name: gtest_outputs_xml | |
| # path: 'stan/math/torsten/**/*_test.xml' |