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metrumresearchgroup · Jan 17, 2024 · 35c0f05 · 35c0f05
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -4,7 +4,7 @@
 ^\.Rproj\.user$
 ^LICENSE\.md$
 ^.drone.yml$
-^.drone.jsonnet$
+^\.github$
 ^README\.Rmd$
 ^_pkgdown\.yml$
 ^docs$

diff --git a/.drone.yml b/.drone.yml
@@ -1,276 +1,6 @@
 ---
 kind: pipeline
 type: docker
-name: mpn:latest
-
-platform:
-  os: linux
-  arch: amd64
-
-steps:
-- name: pull
-  image: omerxx/drone-ecr-auth
-  commands:
-  - $(aws ecr get-login --no-include-email --region us-east-1)
-  - docker pull 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:latest
-  - docker pull 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:latest
-  volumes:
-  - name: docker.sock
-    path: /var/run/docker.sock
-
-
-- name: Install bbi
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:latest
-  commands:
-  - chmod +x install_bbi.sh
-  - ./install_bbi.sh -p /ephemeral/bbi -v 'v3.3.0'
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-- name: "Check package: R 4.0"
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:latest
-  commands:
-  - R -s -e 'devtools::install_deps(upgrade = '"'"'never'"'"')'
-    # this can be removed once nmrec 0.3.0 is available on MPN
-  - git clone --branch 0.3.0 --depth 1 https://github.com/metrumresearchgroup/nmrec.git /tmp/nmrec
-  - R -s -e 'devtools::install("/tmp/nmrec", upgrade = "never")'
-  - R -s -e 'devtools::check(env_vars = c("BBI_EXE_PATH" = "/ephemeral/bbi", "NOT_CRAN" = "true"))'
-  environment:
-    BBI_EXE_PATH: /ephemeral/bbi
-    NOT_CRAN: true
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-- name: "Check package: R 4.1"
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:latest
-  commands:
-  - R -s -e 'devtools::install_deps(upgrade = '"'"'never'"'"')'
-    # this can be removed once nmrec 0.3.0 is available on MPN
-  - git clone --branch 0.3.0 --depth 1 https://github.com/metrumresearchgroup/nmrec.git /tmp/nmrec
-  - R -s -e 'devtools::install("/tmp/nmrec", upgrade = "never")'
-  - R -s -e 'devtools::check(env_vars = c("BBI_EXE_PATH" = "/ephemeral/bbi", "NOT_CRAN" = "true"))'
-  environment:
-    BBI_EXE_PATH: /ephemeral/bbi
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-volumes:
-- name: docker.sock
-  host:
-    path: /var/run/docker.sock
-- name: cache
-  temp: {}
-
-trigger:
-  event:
-    exclude:
-    - promote
-
----
-kind: pipeline
-type: docker
-name: oldest
-
-platform:
-  os: linux
-  arch: amd64
-
-steps:
-- name: pull
-  image: omerxx/drone-ecr-auth
-  commands:
-  - $(aws ecr get-login --no-include-email --region us-east-1)
-  - docker pull 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:2020-06-08
-  volumes:
-  - name: docker.sock
-    path: /var/run/docker.sock
-
-- name: Install bbi
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:2020-06-08
-  commands:
-  - chmod +x install_bbi.sh
-  - ./install_bbi.sh -p /ephemeral/bbi -v 'v3.0.2'
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-- name: "Check package: R 4.0"
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:2020-06-08
-  commands:
-  - R -s -e 'devtools::install_deps(upgrade = '"'"'never'"'"')'
-  # nmrec isn't available until the 2023-09-19 snapshot.
-  - git clone --branch 0.3.0 --depth 1 https://github.com/metrumresearchgroup/nmrec.git /tmp/nmrec
-  - R -s -e 'devtools::install("/tmp/nmrec", upgrade = "never")'
-  - R -s -e 'devtools::check(env_vars = c("BBI_EXE_PATH" = "/ephemeral/bbi", "NOT_CRAN" = "true"))'
-  environment:
-    BBI_EXE_PATH: /ephemeral/bbi
-    NOT_CRAN: true
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-volumes:
-- name: docker.sock
-  host:
-    path: /var/run/docker.sock
-- name: cache
-  temp: {}
-
-trigger:
-  event:
-    exclude:
-    - promote
-
----
-kind: pipeline
-type: docker
-name: cran-latest
-
-platform:
-  os: linux
-  arch: amd64
-
-steps:
-- name: pull
-  image: omerxx/drone-ecr-auth
-  commands:
-  - $(aws ecr get-login --no-include-email --region us-east-1)
-  - docker pull 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:cran-latest
-  - docker pull 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:cran-latest
-  volumes:
-  - name: docker.sock
-    path: /var/run/docker.sock
-
-- name: Install bbi
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:cran-latest
-  commands:
-  - chmod +x install_bbi.sh
-  - ./install_bbi.sh -p /ephemeral/bbi -v 'v3.3.0'
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-- name: "Check package: R 4.0"
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.0:cran-latest
-  commands:
-  - R -s -e 'devtools::install_deps(upgrade = '"'"'always'"'"')'
-    # clone nmrec from main branch for CRAN-latest
-  - git clone --depth 1 https://github.com/metrumresearchgroup/nmrec.git /tmp/nmrec
-  - R -s -e 'devtools::install("/tmp/nmrec", upgrade = "never")'
-  - R -s -e 'devtools::load_all(); sessioninfo::session_info()'
-  - R -s -e 'devtools::check(env_vars = c("BBI_EXE_PATH" = "/ephemeral/bbi", "NOT_CRAN" = "true"))'
-  environment:
-    BBI_EXE_PATH: /ephemeral/bbi
-    NOT_CRAN: true
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-
-- name: "Check package: R 4.1"
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:cran-latest
-  commands:
-  - R -s -e 'devtools::install_deps(upgrade = '"'"'always'"'"')'
-    # clone nmrec from main branch for CRAN-latest
-  - git clone --depth 1 https://github.com/metrumresearchgroup/nmrec.git /tmp/nmrec
-  - R -s -e 'devtools::install("/tmp/nmrec", upgrade = "never")'
-  - R -s -e 'devtools::load_all(); sessioninfo::session_info()'
-  - R -s -e 'devtools::check(env_vars = c("BBI_EXE_PATH" = "/ephemeral/bbi", "NOT_CRAN" = "true"))'
-  environment:
-    BBI_EXE_PATH: /ephemeral/bbi
-    NOT_CRAN: true
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-volumes:
-- name: docker.sock
-  host:
-    path: /var/run/docker.sock
-- name: cache
-  temp: {}
-
-trigger:
-  event:
-    exclude:
-    - promote
-
----
-kind: pipeline
-type: docker
-name: bbr-coverage
-
-platform:
-  os: linux
-  arch: amd64
-
-steps:
-- name: pull
-  image: omerxx/drone-ecr-auth
-  commands:
-  - $(aws ecr get-login --no-include-email --region us-east-1)
-  - docker pull 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:latest
-  volumes:
-  - name: docker.sock
-    path: /var/run/docker.sock
-
-- name: Install bbi
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:latest
-  commands:
-  - chmod +x install_bbi.sh
-  - ./install_bbi.sh -p /ephemeral/bbi -v 'v3.3.0'
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-- name: Code coverage
-  pull: never
-  image: 906087756158.dkr.ecr.us-east-1.amazonaws.com/r-dev-ci-mpn-4.1:latest
-  commands:
-  - R -s -e 'devtools::install_deps(upgrade = '"'"'never'"'"')'
-    # clone nmrec from main branch for coverage
-  - git clone --depth 1 https://github.com/metrumresearchgroup/nmrec.git /tmp/nmrec
-  - R -s -e 'devtools::install("/tmp/nmrec", upgrade = "never")'
-  - R -s -e 'covr::codecov()'
-  environment:
-    BBI_EXE_PATH: /ephemeral/bbi
-    CODECOV_TOKEN:
-      from_secret: CODECOV_TOKEN
-    NOT_CRAN: true
-  volumes:
-  - name: cache
-    path: /ephemeral
-
-volumes:
-- name: docker.sock
-  host:
-    path: /var/run/docker.sock
-- name: cache
-  temp: {}
-
-trigger:
-  event:
-    exclude:
-    - promote
-
-depends_on:
-- mpn:latest
-- cran-latest
----
-kind: pipeline
-type: docker
 name: bbr-release
 
 platform:
@@ -349,8 +79,3 @@ volumes:
 trigger:
   event:
   - tag
-
-depends_on:
-- mpn:latest
-- oldest
-- cran-latest
diff --git a/.github/actions/setup-bbi/action.yaml b/.github/actions/setup-bbi/action.yaml
@@ -0,0 +1,26 @@
+name: Setup bbi
+description: >
+  Install bbi at the specified version to $HOME/bin/bbi, and point the
+  BBI_EXE_PATH environment variable to this location.
+inputs:
+  # TODO: At some point, it'd be nice if the default was to
+  # automatically detect new versions (gh-620).
+  version:
+    description: Version of bbi to install
+    required: true
+    default: v3.3.0
+runs:
+  using: composite
+  steps:
+    - name: Install bbi
+      shell: bash
+      env:
+        BBI_VERSION: ${{ inputs.version }}
+      run: |
+        mkdir -p $HOME/bin
+        url=https://github.com/metrumresearchgroup/bbi/releases/download
+        curl -fSsL "$url/$BBI_VERSION/bbi_linux_amd64.tar.gz" |
+        tar -z --extract --to-stdout >"$HOME/bin/bbi"
+        chmod +x "$HOME/bin/bbi"
+        $HOME/bin/bbi version
+        echo "BBI_EXE_PATH=$HOME/bin/bbi" >>$GITHUB_ENV
diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
@@ -0,0 +1,31 @@
+name: coverage
+on:
+  push:
+    branches:
+      - 'main'
+      - 'scratch/**'
+  pull_request:
+
+jobs:
+  coverage:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Install bbi
+        uses: ./.github/actions/setup-bbi
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: release
+          use-public-rspm: true
+          extra-repositories: 'https://mpn.metworx.com/snapshots/stable/2023-12-05'
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            any::covr
+            github::metrumresearchgroup/nmrec@0.3.0
+          upgrade: 'TRUE'
+      - name: Run covr
+        shell: Rscript {0}
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+        run: covr::codecov()