coverage

metrumresearchgroup · Jul 11, 2024 · 56c0e49 · 56c0e49
1 parent 8133f97
commit 56c0e49
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Showing 5 changed files with 1,018 additions and 989 deletions.
diff --git a/R/mwrite.R b/R/mwrite.R
@@ -67,9 +67,9 @@ mwrite_model_to_list <- function(x) {
   if(nrow(x@annot$data)) {
     annot <- x@annot$data
     annot$options <- NULL
-    if(!requireNamespace("knitr", quietly = TRUE)) {
-      abort("The package \"knitr\" is required.")
-    }
+    if(!requireNamespace("knitr", quietly = TRUE)) { 
+      abort("The package \"knitr\" is required.") #nocov
+    } 
     annot <- knitr::kable(annot, format = "simple")
     annot <- c("# Annotations: ", "", annot)
     if("PROB" %in% names(code)) {
@@ -144,7 +144,7 @@ mwrite_model_to_list <- function(x) {
 #' @export
 mwrite_yaml <- function(x, file = NULL, digits = 8) {
   if(!requireNamespace("yaml", quietly = TRUE)) {
-    abort("The package \"yaml\" is required.")
+    abort("The package \"yaml\" is required.") #nocov
   }
   l <- mwrite_model_to_list(x)
   l$format <- "yaml"
@@ -160,7 +160,7 @@ mwrite_yaml <- function(x, file = NULL, digits = 8) {
 #' @export
 mwrite_json <- function(x, file = NULL, digits = 8) {
   if(!requireNamespace("jsonlite", quietly = TRUE)) {
-    abort("The package \"jsonlite\" is required.")
+    abort("The package \"jsonlite\" is required.") #nocov
   }  
   l <- mwrite_model_to_list(x)
   l$format <- "json"
@@ -230,15 +230,15 @@ mread_json <- function(file, model = basename(file), project = tempdir(), ...) {
 
 parse_yaml <- function(file) {
   if(!requireNamespace("yaml", quietly = TRUE)) {
-    abort("The package \"yaml\" is required.")
+    abort("The package \"yaml\" is required.") #nocov-start
   }
   text <- readLines(file)
   yaml::yaml.load(text)
 }
 
 parse_json <- function(file) {
   if(!requireNamespace("jsonlite", quietly = TRUE)) {
-    abort("The package \"jsonlite\" is required.")
+    abort("The package \"jsonlite\" is required.") #nocov-start
   }
   text <- readLines(file)  
   jsonlite::fromJSON(text)

diff --git a/inst/maintenance/unit/coverage.md b/inst/maintenance/unit/coverage.md
@@ -1,4 +1,4 @@
-# coverage: 78.76%
+# coverage: 80.09%
 
 |file                  | coverage|
 |:---------------------|--------:|
@@ -8,37 +8,38 @@
 |R/class_tgrid.R       |    56.06|
 |R/mrgsims.R           |    58.33|
 |R/generics.R          |    60.00|
+|R/update.R            |    62.98|
 |R/chain.R             |    63.16|
 |R/knobs.R             |    64.76|
-|R/update.R            |    67.65|
 |R/utils.R             |    70.35|
 |R/matlist.R           |    70.42|
 |R/model_include.R     |    71.15|
-|R/handle_spec_block.R |    73.25|
 |R/relabel.R           |    74.14|
 |R/data_set.R          |    75.16|
-|R/class_mrgmod.R      |    75.27|
-|R/class_ev.R          |    77.65|
-|R/param.R             |    78.57|
-|R/modspec.R           |    78.60|
+|R/handle_spec_block.R |    75.19|
+|R/class_mrgmod.R      |    77.14|
+|R/class_ev.R          |    77.91|
+|R/modspec.R           |    79.71|
+|R/param.R             |    79.76|
 |R/realize_addl.R      |    80.65|
 |R/init.R              |    81.25|
 |R/workflows.R         |    81.25|
-|R/compile.R           |    81.82|
 |R/class_build.R       |    81.93|
 |R/class_numericlist.R |    83.33|
 |R/env.R               |    84.21|
-|R/events.R            |    84.39|
+|R/events.R            |    84.44|
 |R/mrgindata.R         |    84.62|
 |R/nmxml.R             |    86.10|
+|R/compile.R           |    87.16|
 |R/class_evd.R         |    87.50|
 |R/class_mrgsims.R     |    87.50|
-|R/mrgsolve.R          |    88.86|
-|R/mrgsim_q.R          |    89.13|
-|R/class_rx.R          |    91.43|
+|R/mrgsim_q.R          |    87.76|
+|R/mrgsolve.R          |    89.15|
 |R/funset.R            |    92.31|
-|R/mread.R             |    95.92|
+|R/class_rx.R          |    92.86|
+|R/inven.R             |    96.10|
 |R/nm-mode.R           |    96.55|
+|R/mread.R             |    96.58|
 |R/class_matlist.R     |   100.00|
-|R/inven.R             |   100.00|
 |R/mcode.R             |   100.00|
+|R/mwrite.R            |   100.00|