Alter figure1

meyer-lab · Sep 16, 2024 · c71033c · c71033c
1 parent 9de5e69
commit c71033c
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/spatialpf2/figures/commonFuncs/plotFactors.py b/spatialpf2/figures/commonFuncs/plotFactors.py
@@ -22,11 +22,13 @@ def plot_condition_factors(
     pd.set_option("display.max_rows", None)
     yt = pd.Series(np.unique(data.obs["Condition"]))
     X = np.array(data.uns["Pf2_A"])
-
+    print(X)
     X = np.log10(X)
-
+    print(X)
     X -= np.median(X, axis=0)
     X /= np.std(X, axis=0)
+
+    print(X)
 
     ind = reorder_table(X)
     X = X[ind]

diff --git a/spatialpf2/figures/figure1.py b/spatialpf2/figures/figure1.py
@@ -16,7 +16,7 @@
 def makeFigure():
     ax, f = getSetup((10, 12), (2, 2))
 
-    rank = 20
+    rank = 2
     X = import_HTAN()
 
     X = pf2(X, rank, doEmbedding=False)