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Update README.md
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micahvista authored Nov 4, 2024
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Expand Up @@ -101,7 +101,8 @@ Parameter
--rg-ks <string> RG header: Key sequence
--rg-pm <string> Platform model. Free-form text providing further details of the platform/technology used.
--rg-bc <string> Barcode sequence identifying the sample or library.




Limitations
----------------------
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Single Query Sequence Size Limit:
2,147,483,647 bases for Modes L, H, S, R.
Unlimited for Mode asm.


Demo
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This is a demonstration of the non-linear alignment algorithm used in VACmap: http://[154.12.33.179:8050](http://154.12.33.179:8050/)/. I hope this tool proves helpful for your research!


Changelog
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Enabled overlapping anchors in non-linear chaining. Jul 4, 2024


TODO
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Reimplement VACmap in C:
Seed: Completed
Non-linear Chaining: Completed
Extend: Under Development
Extend: Completed
Testing

Contact
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Citation
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[https://www.biorxiv.org/content/10.1101/2023.08.03.551566v2](https://www.biorxiv.org/content/10.1101/2023.08.03.551566v3)
[https://www.biorxiv.org/content/10.1101/2023.08.03.551566v3](https://www.biorxiv.org/content/10.1101/2023.08.03.551566v3)

License
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