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Update README.md
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micahvista authored Oct 1, 2024
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vacmap -ref /ref.fasta -read /read.fasta -mode S -t 8 | samtools sort -@4 > alignments.sorted.bam
samtools index -@4 alignments.sorted.bam


*Memory usage: <20GB

Map assembly:
----------------------

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samtools sort -@4 alignments.sam > alignments.sorted.bam
samtools index -@4 alignments.sorted.bam

*Memory usage: 30GB-70GB Using more threads requires more memory.

Parameter
----------------------
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