Discussions

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  Proposed actions for de-bloat of metaproteomics data in mongo DB

  SamuelPurvine started Aug 1, 2024 in General · Closed

  

  

  

  

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  💡

  Should sample_type be required?

  bmeluch started Jul 23, 2024 in Ideas

  

  

  

  

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  the nmdc-schema may contain some Biosample slots that belong exclusively to the submission-schema

  backlog Issue not assigned to a sprint or not completed during a sprint. Needs to be reprioritized.

  turbomam started Nov 29, 2023 in General

  

  

  

  

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  ChemicalEntity use cases, questions, guidance.

  kheal started Jul 25, 2024 in General · Closed

  

  

  

  

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  do we really need a chemical_entity_set?

  turbomam started Jul 24, 2024 in General

  

  

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  🧹

  How to explicitly document what typecode the minter should use

  aclum started Jul 17, 2024 in Schema Best Practices

  

  

  

  

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  berkeley-schema: instrument_name

  mslarae13 started Jul 18, 2024 in General

  

  

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  'sample linkage' may not always be a GUID

  blocked

  mslarae13 started Dec 27, 2023 in General

  

  

  

  

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  💬

  Cleanup: parent + child slots both on Biosample - do we need them?

  bmeluch started Jul 3, 2024 in General

  

  

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  🧹

  new grouping efforts must be exhaustive

  turbomam started Nov 22, 2023 in Schema Best Practices

  

  

  

  

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  Example term mapping exercise: volume

  turbomam started Oct 25, 2023 in Schema Best Practices

  

  

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  we should have valid and invalid examples for all classes in src/data

  turbomam started Feb 8, 2023 in Schema Best Practices

  

  

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  Schema contributors should perform routine maintenance on their invalid example files

  turbomam started Dec 18, 2023 in Schema Best Practices

  

  

  

  

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  invalid example data file naming/commenting practice

  turbomam started Jan 17, 2024 in Schema Best Practices

  

  

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  Permissible values require descriptions and or meanings

  turbomam started Jan 9, 2024 in Schema Best Practices

  

  

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  Schema contributors should ensure that there are no circular dependencies between YAML modules

  turbomam started Dec 18, 2023 in Schema Best Practices

  

  

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  Schema contributors should run linkml linter

  turbomam started Dec 18, 2023 in Schema Best Practices

  

  

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  example data files whose name includes "minimal" must provide only required data

  turbomam started Nov 22, 2023 in Schema Best Practices

  

  

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  we should emphasize reusability/reuse for recently added slots

  turbomam started May 30, 2023 in Schema Best Practices

  

  

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  descriptions shouldn't just rephrase element names

  turbomam started Feb 9, 2023 in Schema Best Practices

  

  

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  📣

  Welcome to nmdc-schema Discussions!

  wdduncan announced Oct 26, 2021 in Announcements

  

  

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