DeepPheWAS is an R package for running phenome wide association studies (PheWAS). It allows user control of all the stages of PheWAS, from data wrangling, through phenotype generation and association testing.
# The development version from GitHub:
# install.packages("devtools")
devtools::install_github("Richard-Packer/DeepPheWAS")For a detailed tutorial see our Github pages site.