don't do simple RR in haplotype mode

mikolmogorov · Jun 17, 2022 · 04a4983 · 04a4983
1 parent 023344f
commit 04a4983
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/flye/__build__.py b/flye/__build__.py
@@ -1 +1 @@
-__build__ = 1778
+__build__ = 1779
diff --git a/src/repeat_graph/main_repeat.cpp b/src/repeat_graph/main_repeat.cpp
@@ -251,7 +251,7 @@ int repeat_main(int argc, char** argv)
 		outGen.outputGfa(proc.getEdgesPaths(), outFolder + "/graph_before_rr.gfa");
 	}
 
-	if (isMeta) 
+	if (isMeta && !keepHaplotypes) 
 	{
 		repResolver.resolveSimpleRepeats();
 	}