try to recover from wrong numWindows

mikolmogorov · Sep 25, 2018 · 5fe67bb · 5fe67bb
1 parent 1a89ef1
commit 5fe67bb
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/src/assemble/extender.cpp b/src/assemble/extender.cpp
@@ -381,7 +381,11 @@ std::vector<FastaRecord::Id>
 		if (coverage.empty())
 		{
 			int numWindows = _readsContainer.seqLen(ovlp.extId) / WINDOW;
-			if (!numWindows) throw std::runtime_error("wrong read length");
+			if (numWindows < 1)
+			{
+				Logger::get().warning() << "Wrong read length: " << numWindows;
+				numWindows = 1;
+			}
 			coverage.assign(numWindows, 0);
 		}