Disable CI on macOS #106
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| workflow_dispatch: | |
| name: R-CMD-check | |
| # Only run actions on the most recent push to a branch | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.head_ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: macos-latest, r: "release" } | |
| - { os: windows-latest, r: "release" } | |
| - { os: ubuntu-latest, r: "devel", http-user-agent: "release" } | |
| - { os: ubuntu-latest, r: "release" } | |
| - { os: ubuntu-latest, r: "oldrel-1" } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| BASILISK_USE_SYSTEM_DIR: 1 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
| - name: Set up pandoc | |
| uses: r-lib/actions/setup-pandoc@929c772977a3a13c8733b363bf5a2f685c25dd91 # v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@929c772977a3a13c8733b363bf5a2f685c25dd91 # v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| # Install miniconda manually, to prevent installation errors on GHA runners | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca # v3.0.4 | |
| - name: Install R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@929c772977a3a13c8733b363bf5a2f685c25dd91 # v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install basilisk | |
| if: runner.os == 'macOS' | |
| run: | | |
| Rscript -e 'install.packages("BiocManager")' | |
| unset DYLD_FALLBACK_LIBRARY_PATH && \ # avoids conda installation error on macOS | |
| Rscript -e 'BiocManager::install("basilisk", type="source")' | |
| # Install conda for basilisk manually | |
| - name: Check basilisk conda installation | |
| shell: Rscript {0} | |
| run: | | |
| basilisk.utils::getCondaDir() | |
| - name: Run R CMD check | |
| uses: r-lib/actions/check-r-package@929c772977a3a13c8733b363bf5a2f685c25dd91 # v2 | |
| with: | |
| upload-snapshots: true |