refactored and optimized segmentation metrics eval #148
Workflow file for this run
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| name: Test Python code | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: True | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.8", "3.10", "3.11"] | |
| channel-priority: [strict] | |
| envfile: [".github/environment.yml"] | |
| include: | |
| - python-version: "3.12" | |
| os: macos-latest | |
| - python-version: "3.12" | |
| os: windows-latest | |
| - python-version: "3.12" | |
| os: ubuntu-latest | |
| channel-priority: flexible | |
| - os: ubuntu-latest | |
| python-version: "3.7" | |
| envfile: ".github/environment-minimal.yml" | |
| channel-priority: "flexible" | |
| name: "Minimal dependencies" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Cache conda packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles( matrix.envfile ) }} | |
| - name: Create conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| channel-priority: ${{ matrix.channel-priority }} | |
| environment-file: ${{ matrix.envfile }} | |
| # Disabling bz2 to get more recent dependencies. | |
| # NOTE: this breaks cache support, so CI will be slower. | |
| use-only-tar-bz2: False # IMPORTANT: This needs to be set for caching to work properly! | |
| - name: Install package in development mode | |
| shell: bash -l {0} | |
| run: python -m pip install --upgrade-strategy=only-if-needed -e .[display,tests] | |
| - name: Log installed packages for debugging | |
| shell: bash -l {0} | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Show libraries in the system on which NumPy was built | |
| shell: bash -l {0} | |
| run: python -c "import numpy; numpy.show_config()" | |
| - name: Show libraries in the system on which SciPy was built | |
| shell: bash -l {0} | |
| run: python -c "import scipy; scipy.show_config()" | |
| - name: Run unit tests | |
| shell: bash -l {0} | |
| run: pytest | |
| working-directory: tests | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| verbose: true |