mitoclub / AminoAcidShift Public

Amino acid shift in mitochondrial proteins is shaped by mtDNA mutational spectrum

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 32 Commits
1main_aa_subst_trends		1main_aa_subst_trends
PCAWG		PCAWG
external_datasets		external_datasets
vertebrates_aa_subst		vertebrates_aa_subst
.gitignore		.gitignore
NC_012920.1.gb		NC_012920.1.gb
README.md		README.md
aa_flow_by_gene_megatree.pdf		aa_flow_by_gene_megatree.pdf
analyse.ipynb		analyse.ipynb
apply_neutral_model_all_datasets.py		apply_neutral_model_all_datasets.py
apply_neutral_model_human_megatree.py		apply_neutral_model_human_megatree.py
apply_random_model.py		apply_random_model.py
datasets_fit_metrics.csv		datasets_fit_metrics.csv
derive_obs_aa_freqs.py		derive_obs_aa_freqs.py
human_germline.ipynb		human_germline.ipynb
megatree_fit_metrics.csv		megatree_fit_metrics.csv
metrics.csv		metrics.csv
model_fit_workflow.ipynb		model_fit_workflow.ipynb
neutral_model_fit_megatree.pdf		neutral_model_fit_megatree.pdf
pca_aa_freqs_megatree.pdf		pca_aa_freqs_megatree.pdf
pyrightconfig.json		pyrightconfig.json
req.dev.txt		req.dev.txt
requirements.txt		requirements.txt
utils.py		utils.py