pfda2dockstore

Export precisionFDA apps to Dockstore

GitHub Repo Creation

This script (createrepo.py) takes your Github token and an organization name and creates a repository in it with a given CWL and Dockerfile. I had to use two libraries here because PyGithub has a bug when creating a release.

pip install PyGithub agithub

python createrepo.py --token $GITHUB_TOKEN --org pfda2dockstore --tool test5 --tag 1.0.0

This will create a test5 repo in Github under the pfda2dockstore organization.

TODO

• working through tagging, I need to merge with Mike's script

Quay.io Repo Creation

Actions:

• Given a Quay token, and Github token, and github repo:
  • Initialize a quay repo with the same name from a Dockerfile in the github repo
  • Setup auto build on any new tag or branch update

Dockstore Registration

Need to add this code, Ola is working on this.

---

Inputs: Github Token, Quay.io token, reponame, list of files