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Phase-slope index using spectral_connectivity_time instead of spectral_connectivity_epochs #718

Phase-slope index using spectral_connectivity_time instead of spectral_connectivity_epochs

Phase-slope index using spectral_connectivity_time instead of spectral_connectivity_epochs #718

Workflow file for this run

name: 'linux / conda'
concurrency:
group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
cancel-in-progress: true
on:
push:
branches:
- '*'
pull_request:
branches:
- '*'
jobs:
# Linux
job:
timeout-minutes: 90
name: 'py3.9'
runs-on: ubuntu-20.04
defaults:
run:
shell: bash -el {0}
env:
CONDA_ENV: 'environment.yml'
DISPLAY: ':99.0'
MNE_LOGGING_LEVEL: 'warning'
MKL_NUM_THREADS: '1'
PYTHONUNBUFFERED: '1'
PYTHON_VERSION: '3.9'
steps:
- uses: actions/checkout@v4
- uses: pyvista/setup-headless-display-action@main
with:
qt: true
pyvista: false
- uses: mamba-org/setup-micromamba@v1
with:
environment-file: ${{ env.CONDA_ENV }}
create-args: >- # beware the >- instead of |, we don't split on newlines but on spaces
python=${{ env.PYTHON_VERSION }}
- run: |
curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/get_minimal_commands.sh -o get_minimal_commands.sh
chmod +x get_minimal_commands.sh
source ./get_minimal_commands.sh
pip install .[test]
name: 'Install dependencies'
- run: pip install git+https://github.com/mne-tools/mne-python@main
- run: pip install -e .
- run: |
which mne
mne sys_info -pd
python -c "import numpy; numpy.show_config()"
name: 'Show infos'
- name: Run pytest
run: python -m pytest . --cov=mne_connectivity --cov-report=xml --cov-config=pyproject.toml --verbose --ignore mne-python
- uses: codecov/codecov-action@v4