BUG: Fix bug with tag and add mne-bids-pipeline (#27)

mne-tools · Aug 27, 2024 · 0746104 · 0746104
1 parent 7e73399
commit 0746104
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 6 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -39,21 +39,21 @@ jobs:
       - run: docker compose build base --build-arg mne_v="$MNE_VERSION"
       - run: docker tag mnetools/mne-python ghcr.io/mne-tools/mne-python:${DOCKER_TAG}
       - name: System info - base image
-        run: docker run mnetools/mne-python:${DOCKER_TAG} python -c "import mne; mne.sys_info()"
+        run: docker run mnetools/mne-python python -c "import mne; mne.sys_info()"
       - name: Run base test
-        run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python:${DOCKER_TAG} python /opt/app/examples/tests/base.py
+        run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python python /opt/app/examples/tests/base.py
       - run: docker compose build jupyter
       - run: docker tag mnetools/mne-python-jupyter ghcr.io/mne-tools/mne-python-jupyter:${DOCKER_TAG}
       - name: System info - jupyter image
-        run: docker run mnetools/mne-python-jupyter:${DOCKER_TAG} ipython -c "import mne; mne.sys_info()"
+        run: docker run mnetools/mne-python-jupyter ipython -c "import mne; mne.sys_info()"
       - name: Run jupyter test
-        run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-jupyter:${DOCKER_TAG} ipython /opt/app/examples/tests/base.py
+        run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-jupyter ipython /opt/app/examples/tests/base.py
       - run: docker compose build plot
       - run: docker tag mnetools/mne-python-plot ghcr.io/mne-tools/mne-python-plot:${DOCKER_TAG}
       - name: System info - plot image
-        run: docker run mnetools/mne-python-plot:${DOCKER_TAG} python -c "import mne; mne.sys_info()"
+        run: docker run mnetools/mne-python-plot python -c "import mne; mne.sys_info()"
       - name: Run plotting test
-        run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-plot:${DOCKER_TAG} python /opt/app/examples/tests/plot.py
+        run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-plot python /opt/app/examples/tests/plot.py
       - name: Push images to github
         run: |
           set -exo pipefail

diff --git a/base/Dockerfile b/base/Dockerfile
@@ -65,6 +65,7 @@ RUN conda install --yes \
     h5io \
     mamba \
     conda-libmamba-solver \
+    mne-bids-pipeline \
     && conda clean -tipy \
     && find /opt/conda/ -type f,l -name '*.a' -delete \
     && find /opt/conda/ -type f,l -name '*.pyc' -delete \