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BUG: Fix bug with tag and add mne-bids-pipeline #27

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Merged
merged 1 commit into from
Aug 27, 2024
Merged

BUG: Fix bug with tag and add mne-bids-pipeline #27

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12 changes: 6 additions & 6 deletions .github/workflows/main.yml
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Expand Up @@ -39,21 +39,21 @@ jobs:
- run: docker compose build base --build-arg mne_v="$MNE_VERSION"
- run: docker tag mnetools/mne-python ghcr.io/mne-tools/mne-python:${DOCKER_TAG}
- name: System info - base image
run: docker run mnetools/mne-python:${DOCKER_TAG} python -c "import mne; mne.sys_info()"
run: docker run mnetools/mne-python python -c "import mne; mne.sys_info()"
- name: Run base test
run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python:${DOCKER_TAG} python /opt/app/examples/tests/base.py
run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python python /opt/app/examples/tests/base.py
- run: docker compose build jupyter
- run: docker tag mnetools/mne-python-jupyter ghcr.io/mne-tools/mne-python-jupyter:${DOCKER_TAG}
- name: System info - jupyter image
run: docker run mnetools/mne-python-jupyter:${DOCKER_TAG} ipython -c "import mne; mne.sys_info()"
run: docker run mnetools/mne-python-jupyter ipython -c "import mne; mne.sys_info()"
- name: Run jupyter test
run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-jupyter:${DOCKER_TAG} ipython /opt/app/examples/tests/base.py
run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-jupyter ipython /opt/app/examples/tests/base.py
- run: docker compose build plot
- run: docker tag mnetools/mne-python-plot ghcr.io/mne-tools/mne-python-plot:${DOCKER_TAG}
- name: System info - plot image
run: docker run mnetools/mne-python-plot:${DOCKER_TAG} python -c "import mne; mne.sys_info()"
run: docker run mnetools/mne-python-plot python -c "import mne; mne.sys_info()"
- name: Run plotting test
run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-plot:${DOCKER_TAG} python /opt/app/examples/tests/plot.py
run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-plot python /opt/app/examples/tests/plot.py
- name: Push images to github
run: |
set -exo pipefail
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1 change: 1 addition & 0 deletions base/Dockerfile
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Expand Up @@ -65,6 +65,7 @@ RUN conda install --yes \
h5io \
mamba \
conda-libmamba-solver \
mne-bids-pipeline \
&& conda clean -tipy \
&& find /opt/conda/ -type f,l -name '*.a' -delete \
&& find /opt/conda/ -type f,l -name '*.pyc' -delete \
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