[pre-commit.ci] pre-commit autoupdate

.github/workflows/tests.yml

@@ -26,7 +26,7 @@ jobs:
           - os: ubuntu-latest
             mne: stable
             kind: pip
-            python: "3.9"  # oldest
+            python: "3.10"  # oldest
           - os: ubuntu-latest
             mne: dev
             kind: pip

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
   # Ruff mne
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.1
+    rev: v0.6.2
     hooks:
       - id: ruff
         args: ["--fix"]

Dockerfile

@@ -1,26 +1,19 @@
-ARG mne_python_v=main
+ARG mne_python_v=latest
 ARG nilearn_v=main
-ARG mne_bids_v=main
 ARG mne_nirs_v=main
 
 FROM ghcr.io/mne-tools/mne-python-plot:${mne_python_v}
 
 ARG nilearn_v
-ARG mne_bids_v
 ARG mne_nirs_v
 
-USER root
+USER mne_user
+WORKDIR $HOME_DIR
 
-RUN apt-get update && apt-get install -y --no-install-recommends git
-RUN pip install statsmodels dabest fooof h5io
 RUN pip install git+https://github.com/nilearn/nilearn.git@${nilearn_v}
-RUN pip install git+https://github.com/mne-tools/mne-bids.git@${mne_bids_v}
 RUN pip install git+https://github.com/mne-tools/mne-nirs.git@${mne_nirs_v}
 
 # Copy examples
 COPY ./ /home/mne_user/
 
-USER $MNE_USER
-WORKDIR $HOME_DIR
-
 ENTRYPOINT ["tini", "-g", "--", "/usr/bin/prepare.sh"]

environment.yml

@@ -2,7 +2,7 @@ name: mne-nirs
 channels:
 - conda-forge
 dependencies:
-- python>=3.9
+- python>=3.10
 - pip
 - conda
 - mamba

pyproject.toml

@@ -10,7 +10,7 @@ maintainers = [{ name = "Robert Luke", email = "robert.luke@mq.edu.au" }]
 license = { text = "BSD-3-Clause" }
 readme = { file = "README.rst", content-type = "text/x-rst" }
 
-requires-python = ">=3.9"
+requires-python = ">=3.10"
 keywords = [
     "neuroscience",
     "neuroimaging",

requirements_doc.txt

@@ -20,5 +20,4 @@ seaborn
 fooof
 snirf
 statsmodels
-dabest
 mne-qt-browser