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some change to the README
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mojo8787 committed Dec 21, 2023
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Expand Up @@ -11,50 +11,53 @@ including Random Forest, Support Vector Regression (SVR), and other regression m
- Key Libraries: `tidyverse`, `caret`, `e1071`, `rpart`, `randomForest`, `ggplot2`, `readr`, `ggpubr`

## Data Description
(Include a brief description of the data used in your project, its source, and any preprocessing steps you performed.)
The project uses preprocessed gene expression data, including various features and a target variable (score). The data is analyzed to understand the relationships between different genes and their
expression levels.

## Machine Learning Models and Techniques
(Describe the various machine learning models and techniques used in your analysis, such as Random Forest, SVR, feature selection methods, etc.)
- **Random Forest Regression (Python)**: Used for hyperparameter tuning and model fitting.
- **Support Vector Regression (SVR) (Python & R)**: Applied for modeling gene expression data with linear kernel.
- **Feature Selection and Analysis**: Mutual Information, Recursive Feature Elimination (RFE), and Correlation Analysis.
- **Model Evaluation**: Using Mean Squared Error (MSE) and Root Mean Squared Error (RMSE).
- **Baseline Comparison**: Comparison with a dummy regressor to establish baseline performance.

## Visualizations
The following visualizations represent key insights from our analysis:
Key visualizations from the analysis are presented below:

### Line Plot
![Line Plot](images/line_plot.png)
(A brief description of what the line plot represents and insights derived from it.)
*Description of the line plot.*

### Scatter Plot
![Scatter Plot](images/scatter_plot.png)
(Explanation of the scatter plot findings and its significance in your analysis.)
*Explanation of the scatter plot findings.*

### Bar Chart
![Bar Chart](images/bar_chart.png)
(Details about the data shown in the bar chart and how it relates to your project's goals.)
*Details about the data shown in the bar chart.*

### Density Plot
![Density Plot](images/density_plot.png)
(Interpretation of the density plot and what it reveals about your data.)
*Interpretation of the density plot.*

### Joint Density Plot
![Joint Density Plot](images/joint_density_plot.png)
(Insights from the joint density plot and its relevance to the gene expression analysis.)
*Insights from the joint density plot.*

## Results and Discussion
(Summarize the key findings of your project, any interesting patterns or observations from the analysis, and potential implications of these results.)
Summary of key findings, including feature importance, model performance comparison, and visualization insights.

## Installation and Setup
(Provide instructions on how to set up and run your project, including any necessary dependencies and environment setup.)
Instructions on setting up the environment and running the scripts.

## Usage
(Detail how to use the project, including how to run the scripts and utilize the analysis.)
Details on how to run the scripts and utilize the analysis.

## Contributing
(Information on how others can contribute to the project, if applicable.)
Information on how others can contribute to the project.

## Contact
For more information or inquiries, please contact [Your Contact Information].
For more information or inquiries, please contact [motasem.youniss@gmail.com](mailto:motasem.youniss@gmail.com).

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(Feel free to add or modify sections as necessary for your project.)

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