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MokaGuys

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  1. seglh-cnv seglh-cnv Public

    Scripts and docker images to run CNV pipelines

    R 3 1

  2. automate_demultiplex automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2

  3. dnanexus_swiss_army_SNP_bcftools_filter dnanexus_swiss_army_SNP_bcftools_filter Public

    This repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks

    Shell 1

  4. dnanexus_ED_cnv_calling dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    Shell 1

  5. seglh-naming seglh-naming Public

    SEGLH naming schemes

    Python 1 1

  6. WGS_puberty_CNVs WGS_puberty_CNVs Public

    Scripts for filtering WGS Puberty SV data

    1

Repositories

Showing 10 of 189 repositories
  • dnanexus_mokapipe_workflow Public

    Workflow description of DNANexus workflow GATK3.5

    moka-guys/dnanexus_mokapipe_workflow’s past year of commit activity
    0 0 0 1 Updated Nov 14, 2024
  • dnanexus_happy Public

    DNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval

    moka-guys/dnanexus_happy’s past year of commit activity
    Shell 0 0 2 0 Updated Nov 13, 2024
  • bedmakerGUI Public
    moka-guys/bedmakerGUI’s past year of commit activity
    0 0 0 1 Updated Nov 13, 2024
  • archer_api_upload Public
    moka-guys/archer_api_upload’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 7, 2024
  • dnanexus_scip_mpileup Public

    Modified version of dnanexus_mpileup to do some extra data manipulation on scip patient data

    moka-guys/dnanexus_scip_mpileup’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 7, 2024
  • SCIP Public
    moka-guys/SCIP’s past year of commit activity
    0 0 0 0 Updated Nov 7, 2024
  • dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    moka-guys/dnanexus_ED_cnv_calling’s past year of commit activity
    Shell 1 0 4 1 Updated Nov 1, 2024
  • adhoc_scripts Public

    Scripts for adhoc changes. See readme for details of each script

    moka-guys/adhoc_scripts’s past year of commit activity
    Python 0 0 3 0 Updated Oct 31, 2024
  • get_DNAnexus_URLs Public

    Generates a .json containing URLs for VCF, BAM and index files located on DNAnexus for use in the IGV browser

    moka-guys/get_DNAnexus_URLs’s past year of commit activity
    Python 0 0 3 0 Updated Oct 8, 2024
  • dnanexus_archer_api_upload Public
    moka-guys/dnanexus_archer_api_upload’s past year of commit activity
    0 MIT 0 0 1 Updated Oct 1, 2024
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