Skip to content

Commit 38f1f8e

Browse files
committed
Update to demux readme to reflect gzip/fastq checks
1 parent cf9f3fd commit 38f1f8e

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

demultiplex/README.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -76,7 +76,7 @@ Logging is performed using [ad_logger](../ad_logger/ad_logger.py).
7676
| ------------------ | ------------------------------------------------------------------------------ | ----------------------------------------------------- | ---------------------------------------------------------------------------------- |
7777
| Demultiplex output | Catches any traceback from errors when running the cron job that are not caught by exception handling within the script | `TIMESTAMP.txt` | `/usr/local/src/mokaguys/automate_demultiplexing_logfiles/Demultiplex_cron_stdout` |
7878
| demultiplex (script_logger) | Records script-level logs for the demultiplex script | `TIMESTAMP_demultiplex_script.log` | `/usr/local/src/mokaguys/automate_demultiplexing_logfiles/demultiplexing_script_logfiles/` |
79-
| demultiplex (demux_rf_logger) | Records runfolder-level logs for the demultiplex script | `RUNFOLDERNAME_demultiplex_runfolder.log` | `/usr/local/src/mokaguys/automate_demultiplexing_logfiles/demultiplexing_script_logfiles/` |
79+
| demultiplex (demux_rf_logger) | Records runfolder-level logs including gzip validation results and FASTQ file structure checks | `RUNFOLDERNAME_demultiplex_runfolder.log` | `/usr/local/src/mokaguys/automate_demultiplexing_logfiles/demultiplexing_script_logfiles/` |
8080
Bcl2fastq output | STDERR from bcl2fastq2 | `bcl2fastq2_output.log` | Within the runfolder |
8181

8282
## Testing

0 commit comments

Comments
 (0)