Releases: molgenis/capice-resources
Releases · molgenis/capice-resources
v5.2.0
What's Changed
- fix: Support for patch1 VIP custom gnomad file by @SietsmaRJ in #70
- Fix/python3.11 support by @SietsmaRJ in #71
- fix: Pathogenic label violinplot incorrect by @SietsmaRJ in #73
- chore: GnomAD HN Model Validation plots by @SietsmaRJ in #74
- Feat/unbiased comparison validation file by @SietsmaRJ in #76
- Feat/singular model plots by @SietsmaRJ in #77
- fix: Flipped model 1 and 2 in violinplots by @SietsmaRJ in #79
- chore: CAPICE 5.2.0 release by @SietsmaRJ in #80
Full Changelog: v5.1.0...v5.2.0
Contributors
SietsmaRJ
Assets 2
v5.1.0
What's Changed
- feat: Add bind flag pipe to apptainer by @SietsmaRJ in #64
- fix: Unsupported alt contigs by @SietsmaRJ in #67
- feat: Additional VCF metadata by @SietsmaRJ in #66
Full Changelog: v5.0.0...v5.1.0
Contributors
SietsmaRJ
Assets 2
v5.0.0
What's Changed
- Feat: ar gene filtering by @SietsmaRJ in #28
- fix: gitignore by @SietsmaRJ in #31
- Fix/update train process steps + minor fixes/additions by @svandenhoek in #17
- feat: Public VKGL by @SietsmaRJ in #33
- Feat/af bin validation by @SietsmaRJ in #32
- Fix README layout by @svandenhoek in #34
- fix/readme_update_public_vkgl by @svandenhoek in #36
- Feat/expanded threshold by @SietsmaRJ in #35
- Feat/violinplots by @SietsmaRJ in #37
- Feat/compare models qol by @SietsmaRJ in #40
- Feat/improved duplicate checking by @SietsmaRJ in #41
- chore: Bump dependency versions by @SietsmaRJ in #44
- Added github templates. by @svandenhoek in #46
- Feat/improved validation dataset by @SietsmaRJ in #38
- Refactor/improved code structure by @SietsmaRJ in #48
- docs:add acknowledgements by @dennishendriksen in #52
- chore: Update and equalize dependencies by @SietsmaRJ in #50
- docs: Fixed README typo. by @svandenhoek in #53
- feat: Validation 5.0.0-v2 by @SietsmaRJ in #43
- fix: ClinVar SYMBOL ID in export VCF ID column by @SietsmaRJ in #51
- fix: Violinplot split error by @SietsmaRJ in #57
- Optimized slurm time to match the used cluster queue's. by @svandenhoek in #59
- Fix for plot paths giving very long string (that doesn't always fit) by @svandenhoek in #62
- Update setup.py by @svandenhoek in #61
- chore: 5.0.0 release by @SietsmaRJ in #60
- feat: Picard 3.0.0 support by @SietsmaRJ in #63
New Contributors
- @dennishendriksen made their first contribution in #52
Full Changelog: v4.0.0...v5.0.0
Contributors
dennishendriksen, svandenhoek, and SietsmaRJ
Assets 2
v4.0.0-v2
Contributors
SietsmaRJ
Assets 4
v4.0.0
What's Changed
- fix: Windows testing by @SietsmaRJ in #5
- feat: Build 37 build 38 model comparison by @SietsmaRJ in #7
- Bump numpy from 1.21.4 to 1.22.0 by @dependabot in #8
- Fix for separator conflicting with certain gene symbol by @svandenhoek in #18
- fix: ClinVar review status by @SietsmaRJ in #16
- fix: Conflicting consensi by @SietsmaRJ in #12
- Hotfix for pip install by @svandenhoek in #21
- Fix/comparison scripts by @SietsmaRJ in #19
- fix: Amount of samples in AUC.png by @SietsmaRJ in #24
- feat: Calculate threshold by @SietsmaRJ in #26
- Feat/simplified bcftools by @SietsmaRJ in #30
- Validation 4.0.0 by @SietsmaRJ in #29
New Contributors
- @dependabot made their first contribution in #8
Full Changelog: v3.0.0-v1...v4.0.0
Contributors
svandenhoek, SietsmaRJ, and dependabot
Assets 6
v4.0.0rc3
v4.0.0rc1
v4.0.0rc2
v3.0.0-v1
v3.0.0-rc4
- Added SpliceAI feature
- Removed Domains feature
- Removed Regulatory feature