fix: migration for columnProfiles (#2825)

molgenis · Oct 5, 2023 · 6437fd7 · 6437fd7
1 parent b4c4514
commit 6437fd7
Show file tree

Hide file tree

Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/backend/molgenis-emx2-sql/src/main/java/org/molgenis/emx2/sql/MetadataUtils.java b/backend/molgenis-emx2-sql/src/main/java/org/molgenis/emx2/sql/MetadataUtils.java
@@ -69,7 +69,7 @@ public class MetadataUtils {
   private static final Field<String[]> COLUMN_SEMANTICS =
       field(name("columnSemantics"), VARCHAR.nullable(true).getArrayType());
   private static final Field<String[]> COLUMN_PROFILES =
-          field(name("columnProfiles"), VARCHAR.nullable(true).getArrayType());
+      field(name("columnProfiles"), VARCHAR.nullable(true).getArrayType());
   private static final Field<String> COLUMN_TYPE =
       field(name("columnType"), VARCHAR.nullable(false));
   private static final Field<Boolean> COLUMN_REQUIRED =
@@ -241,7 +241,6 @@ protected static void init(DSLContext j) {
                         COLUMN_CASCADE,
                         COLUMN_DESCRIPTION,
                         COLUMN_SEMANTICS,
-                        COLUMN_PROFILES,
                         COLUMN_VISIBLE)
                     .constraints(
                         primaryKey(TABLE_SCHEMA, TABLE_NAME, COLUMN_NAME),

diff --git a/backend/molgenis-emx2-sql/src/main/java/org/molgenis/emx2/sql/Migrations.java b/backend/molgenis-emx2-sql/src/main/java/org/molgenis/emx2/sql/Migrations.java
@@ -20,7 +20,7 @@
 
 public class Migrations {
   // version the current software needs to work
-  private static final int SOFTWARE_DATABASE_VERSION = 10;
+  private static final int SOFTWARE_DATABASE_VERSION = 11;
   private static Logger logger = LoggerFactory.getLogger(Migrations.class);
 
   public static synchronized void initOrMigrate(SqlDatabase db) {
@@ -83,6 +83,8 @@ public static synchronized void initOrMigrate(SqlDatabase db) {
           if (version < 10)
             executeMigrationFile(tdb, "migration10.sql", "add Aggregate role for each schema");
 
+          if (version < 11) executeMigrationFile(tdb, "migration11.sql", "add profile metadata");
+
           // if success, update version to SOFTWARE_DATABASE_VERSION
           updateDatabaseVersion((SqlDatabase) tdb, SOFTWARE_DATABASE_VERSION);
         });

diff --git a/backend/molgenis-emx2-sql/src/main/resources/org/molgenis/emx2/sql/migration11.sql b/backend/molgenis-emx2-sql/src/main/resources/org/molgenis/emx2/sql/migration11.sql
@@ -0,0 +1,2 @@
+ALTER TABLE "MOLGENIS"."column_metadata"
+    ADD COLUMN IF NOT EXISTS "columnProfiles" VARCHAR[];
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		ALTER TABLE "MOLGENIS"."column_metadata"
		ADD COLUMN IF NOT EXISTS "columnProfiles" VARCHAR[];