Skip to content

Latest commit

 

History

History
18 lines (10 loc) · 1.25 KB

README.md

File metadata and controls

18 lines (10 loc) · 1.25 KB
Raw

VFB_neo_KB loading & update code: Build Status

VFB_neo4j

Neo4J servers:

  • VFB_neo_KB: The VFB knowledgeBase is the primary site of data-integration and annotations in VFB. It includes all of VFB's annotation of images and the anatomy they depict. This database uses a standard schema to represent OWL, allowing us to use a generic transform to write OWL from the DB. We are in the process of developing a standard pipeline to pull connectomic data into tthe KB from CATMAID.

  • VFB_neo_prod: production neo4J server. This DB is built from a number of sources: OWL loaded via the OLS loader + some side loading from OWL via Jython scripts (These should be ditched if/when OLS supports importing the relevant axioms); Data directly imported from FlyBase; Data directly imported from VFB_neo_KB.

    • STATUS: In use. Imports from FlyBase are almost complete.

  • VFB_neo_dev: development version of the production server

Pipeline

image

For details see VFB pipeline doc