VFB_neo_KB loading & update code:
Neo4J servers:
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VFB_neo_KB: The VFB knowledgeBase is the primary site of data-integration and annotations in VFB. It includes all of VFB's annotation of images and the anatomy they depict. This database uses a standard schema to represent OWL, allowing us to use a generic transform to write OWL from the DB. We are in the process of developing a standard pipeline to pull connectomic data into tthe KB from CATMAID.
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VFB_neo_prod: production neo4J server. This DB is built from a number of sources: OWL loaded via the OLS loader + some side loading from OWL via Jython scripts (These should be ditched if/when OLS supports importing the relevant axioms); Data directly imported from FlyBase; Data directly imported from VFB_neo_KB.
- STATUS: In use. Imports from FlyBase are almost complete.
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VFB_neo_dev: development version of the production server
Pipeline
For details see VFB pipeline doc