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66 Open 159 Closed
66 Open 159 Closed
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Issues list

Add HPOA extraction template template A request for a new or modified template
#513 opened Apr 8, 2025 by caufieldjh
Need some guidance on constructing schema annotation Strategies for accomplishing or improving annotation
#512 opened Apr 2, 2025 by lzt5269
1
ModuleNotFoundError: No module named 'linkml_runtime.utils.dataclass_extensions_376'
#511 opened Mar 29, 2025 by UriNeri
1
UserWarning from pydantic about fields
#502 opened Feb 4, 2025 by caufieldjh
Produce extraction template for Croissant metadata
#500 opened Jan 23, 2025 by caufieldjh
Support for a list of urls for web-extract
#499 opened Jan 17, 2025 by kevinschaper
odd column values in kgx tsv
#498 opened Jan 17, 2025 by kevinschaper
1
Error using --system-message with LLM (Mistral)
#490 opened Dec 11, 2024 by mcisneiros
2
Test on Python 3.13 bug Something isn't working documentation Improvements or additions to documentation
#480 opened Nov 21, 2024 by caufieldjh
This error originates from a subprocess bug Something isn't working
#474 opened Nov 10, 2024 by SaraNiknamHesar
13
Using OntoGPT outside BioInformatics question Further information is requested template A request for a new or modified template
#471 opened Nov 8, 2024 by jamesfebin
6
Don't raise errors when attempting to parse "accessory" text enhancement New feature or request
#466 opened Oct 25, 2024 by caufieldjh
Add error flag for extracted objects enhancement New feature or request
#456 opened Sep 18, 2024 by caufieldjh
Do not cache fully empty responses enhancement New feature or request
#455 opened Sep 18, 2024 by caufieldjh
1
Remove Unicode control characters enhancement New feature or request
#454 opened Sep 18, 2024 by caufieldjh
TALISMAN: update to work with non-OpenAI models
#450 opened Sep 6, 2024 by caufieldjh
Add parser for dataframes enhancement New feature or request
#446 opened Aug 26, 2024 by caufieldjh
Support including system messages in templates enhancement New feature or request
#436 opened Aug 13, 2024 by caufieldjh
Make missing API key errors more friendly enhancement New feature or request
#368 opened Apr 29, 2024 by caufieldjh
Add grounding refiner option for SPIRES enhancement New feature or request
#361 opened Apr 1, 2024 by caufieldjh
Followup on #353 - support including annotations in schemas to model KGX output enhancement New feature or request
#356 opened Mar 26, 2024 by caufieldjh
1
Best way to apply on large quantities of documents?
#352 opened Mar 22, 2024 by serenalotreck
19
Using value set expansion with non-OBO annotator leads to 404 error
#347 opened Mar 15, 2024 by caufieldjh
2
industrial-production-specific SPIRES template A request for a new or modified template
#340 opened Feb 27, 2024 by caufieldjh
2
Provide equivalencies for phenotype terms enhancement New feature or request
#334 opened Feb 13, 2024 by caufieldjh
6
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