update notebook

morris-lab · Jan 11, 2022 · 8929d9a · 8929d9a
1 parent 6f8faf2
commit 8929d9a
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Showing 3 changed files with 9 additions and 3 deletions.
diff --git a/...04_Network_analysis/.ipynb_checkpoints/Network_analysis_with_Seurat_data-checkpoint.ipynb b/...04_Network_analysis/.ipynb_checkpoints/Network_analysis_with_Seurat_data-checkpoint.ipynb
@@ -1503,7 +1503,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "links.filter_links(p=0.001, weight=\"coef_abs\", thread_number=2000)"
+    "links.filter_links(p=0.001, weight=\"coef_abs\", threshold_number=2000)"
    ]
   },
   {

diff --git a/docs/notebooks/04_Network_analysis/.log b/docs/notebooks/04_Network_analysis/.log
@@ -270523,3 +270523,9 @@ label 422:
 2022-01-11 15:11:37,022 [14428] DEBUG    root:197: [JupyterRequire] Configuration requested: {'paths': {}, 'shim': None}
 2022-01-11 15:11:37,023 [14428] INFO     root:271: [JupyterRequire] Comms have been successfully initialized.
 2022-01-11 15:11:37,023 [14428] DEBUG    root:97: [JupyterRequire] Registering comm targets.
+2022-01-11 15:14:41,523 [14803] DEBUG    root:75: [JupyterRequire] Loading Jupyter Require extension.
+2022-01-11 15:14:41,523 [14803] DEBUG    root:93: [JupyterRequire] Initializing comms.
+2022-01-11 15:14:41,523 [14803] INFO     root:247: [JupyterRequire] Initializing comms.
+2022-01-11 15:14:41,526 [14803] DEBUG    root:197: [JupyterRequire] Configuration requested: {'paths': {}, 'shim': None}
+2022-01-11 15:14:41,526 [14803] INFO     root:271: [JupyterRequire] Comms have been successfully initialized.
+2022-01-11 15:14:41,526 [14803] DEBUG    root:97: [JupyterRequire] Registering comm targets.
diff --git a/docs/notebooks/04_Network_analysis/Network_analysis_with_Seurat_data.ipynb b/docs/notebooks/04_Network_analysis/Network_analysis_with_Seurat_data.ipynb
@@ -1503,7 +1503,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "links.filter_links(p=0.001, weight=\"coef_abs\", thread_number=2000)"
+    "links.filter_links(p=0.001, weight=\"coef_abs\", threshold_number=2000)"
    ]
   },
   {
@@ -3200,7 +3200,7 @@
  ],
  "metadata": {
   "finalized": {
-   "timestamp": 1623269400628,
+   "timestamp": 1641935706786,
    "trusted": false
   },
   "kernelspec": {