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T1K v1.0.2
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@mourisl mourisl released this 19 Mar 15:13
· 62 commits to master since this release
v1.0.2
8ebac7f
  • Add the option "--alleleWhitelist" to only retain alignments on the alleles in the whitelist. An example of creating the whitelist based on OptiType's frequent allele list can be found at "https://github.com/mourisl/T1K_manuscript_evaluation/tree/master/Fig1"
  • Tuned the parameter in the SMART-seq wrapper
  • Adjust the weight in the EM algorithm if the allele length differs too much.
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