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| tests/test-pics-cart-loop: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| $(ROOTDIR)/bart -l 8192 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref img_l2_p ;\ | ||
| rm *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-loop_range: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref_03 ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref_13 ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_3.ra img_l2_ref_23 ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra img_l2_ref_02 ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra img_l2_ref_01 ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 1 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p13 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_13 img_l2_p13 ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 0 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p03 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_03 img_l2_p03 ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 2 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p23 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_23 img_l2_p23 ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 0 -e 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p02 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_02 img_l2_p02 ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 0 -e 1 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p01 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_01 img_l2_p01 ;\ | ||
| rm *.cfl ; rm *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-slice: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 0 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_0 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 $(TESTS_OUT)/img_l2_1.ra img_l2_0 ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 1 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_1 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 $(TESTS_OUT)/img_l2_2.ra img_l2_1 ;\ | ||
| $(ROOTDIR)/bart -l 8192 -s 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_2 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 $(TESTS_OUT)/img_l2_3.ra img_l2_2 ;\ | ||
| rm *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-loop_range-omp: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref_03.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref_13.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_3.ra img_l2_ref_23.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra img_l2_ref_02.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra img_l2_ref_01.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| OMP_NUM_THREADS=2 $(ROOTDIR)/bart -l 8192 -s 1 -e 3 -t 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p13 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_13.ra img_l2_p13 ;\ | ||
| OMP_NUM_THREADS=4 $(ROOTDIR)/bart -l 8192 -s 0 -e 3 -t 4 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p03 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_03.ra img_l2_p03 ;\ | ||
| OMP_NUM_THREADS=2 $(ROOTDIR)/bart -l 8192 -s 2 -e 3 -t 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p23 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_23.ra img_l2_p23 ;\ | ||
| OMP_NUM_THREADS=2 $(ROOTDIR)/bart -l 8192 -s 0 -e 2 -t 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p02 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_02.ra img_l2_p02 ;\ | ||
| OMP_NUM_THREADS=2 $(ROOTDIR)/bart -l 8192 -s 0 -e 1 -t 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p01 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_01.ra img_l2_p01 ;\ | ||
| rm *.ra *.cfl *.hdr; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| TESTS += tests/test-pics-cart-loop tests/test-pics-cart-loop_range tests/test-pics-cart-slice | ||
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| ifeq ($(OMP),1) | ||
| TESTS_SLOW += tests/test-pics-cart-loop_range-omp | ||
| endif | ||
|
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| @@ -0,0 +1,168 @@ | ||
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| tests/test-pics-cart-batch-mpi: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| mpirun -n 4 $(ROOTDIR)/bart -p 8192 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref.ra img_l2_p ;\ | ||
| rm *.ra *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-range-batch-mpi: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref_03.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra img_l2_ref_13.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_3.ra img_l2_ref_23.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra img_l2_ref_02.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/img_l2_1.ra img_l2_ref_01.ra ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -l 8192 -s 0 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p03 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_03.ra img_l2_p03 ;\ | ||
| mpirun -n 4 $(ROOTDIR)/bart -l 8192 -s 1 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p13 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_13.ra img_l2_p13 ;\ | ||
| mpirun -n 4 $(ROOTDIR)/bart -l 8192 -s 2 -e 3 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p23 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_23.ra img_l2_p23 ;\ | ||
| mpirun -n 4 $(ROOTDIR)/bart -l 8192 -s 0 -e 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p02 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_02.ra img_l2_p02 ;\ | ||
| mpirun -n 3 $(ROOTDIR)/bart -l 8192 -s 0 -e 1 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p01 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref_01.ra img_l2_p01 ;\ | ||
| rm *.ra *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-mpi: bart pics copy nrmse $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/sens_1.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(TOOLDIR)/copy $(TESTS_OUT)/ksp_usamp_1.ra shepplogan_coil_ksp ;\ | ||
| $(TOOLDIR)/copy $(TESTS_OUT)/sens_1.ra coils ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart pics --mpi=8 -S -r0.001 shepplogan_coil_ksp coils reco ;\ | ||
| $(ROOTDIR)/bart pics -S -r0.001 shepplogan_coil_ksp coils reco_ref ;\ | ||
| $(TOOLDIR)/nrmse -t 1e-5 reco_ref reco ;\ | ||
| rm *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-mpi_shared: bart pics copy nrmse $(TESTS_OUT)/shepplogan_coil_ksp.ra $(TESTS_OUT)/coils.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(TOOLDIR)/copy $(TESTS_OUT)/shepplogan_coil_ksp.ra shepplogan_coil_ksp ;\ | ||
| $(TOOLDIR)/copy $(TESTS_OUT)/coils.ra coils ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -S pics --mpi=8 -S -r0.001 shepplogan_coil_ksp coils reco ;\ | ||
| $(ROOTDIR)/bart pics -S -r0.001 shepplogan_coil_ksp coils reco_ref ;\ | ||
| $(TOOLDIR)/nrmse -t 1e-5 reco_ref reco ;\ | ||
| rm *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-mpi-sharedcoil: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/sens_1.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra sens_p ;\ | ||
| mpirun -n 3 $(ROOTDIR)/bart -S pics --mpi=8 -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p ;\ | ||
| $(ROOTDIR)/bart -S pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_ref ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref img_l2_p ;\ | ||
| rm *.cfl *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-mpi-timedim: bart | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart phantom -s4 -m coils ;\ | ||
| $(ROOTDIR)/bart phantom -m img.ra ;\ | ||
| $(ROOTDIR)/bart fmac img.ra coils cimg.ra ;\ | ||
| $(ROOTDIR)/bart fft -u 7 cimg.ra ksp ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -S pics --mpi=$(shell $(ROOTDIR)/bart bitmask 13) -i10 -w 1. -m ksp coils reco ;\ | ||
| $(ROOTDIR)/bart pics -i10 -w 1. -m ksp coils ref.ra ;\ | ||
| $(ROOTDIR)/bart nrmse -t 1e-5 ref.ra reco ;\ | ||
| rm *.cfl *.hdr *.ra ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-cart-mpi-multipledims: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| mpirun --host localhost:6 -n 6 $(ROOTDIR)/bart -S pics --mpi=8200 -i10 -S -l2 -r 0.005 ksp_usamp_p sens_p img_l2_p ;\ | ||
| $(ROOTDIR)/bart -S pics -i10 -S -l2 -r 0.005 ksp_usamp_p sens_p img_l2_ref ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref img_l2_p ;\ | ||
| rm *.cfl ; rm *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
|
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| tests/test-pics-cart-mpi-multipledims-sharedcoil: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/sens_1.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart copy $(TESTS_OUT)/sens_1.ra sens_p ;\ | ||
| mpirun --host localhost:6 -n 6 $(ROOTDIR)/bart -S pics --mpi=8200 -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_p ;\ | ||
| $(ROOTDIR)/bart -S pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_ref ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 img_l2_ref img_l2_p ;\ | ||
| rm *.cfl ; rm *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
|
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| tests/test-pics-noncart-mpi: bart traj phantom ones pics nrmse | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(TOOLDIR)/traj -r -x128 -o2. -y64 traj.ra ;\ | ||
| $(TOOLDIR)/phantom -s4 -t traj.ra ksp ;\ | ||
| $(TOOLDIR)/phantom -S4 col ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -S pics --mpi=8 -S --fista -e -r0.001 -t traj.ra ksp col reco1 ;\ | ||
| $(ROOTDIR)/bart pics -S --fista -e -r0.001 -t traj.ra ksp col reco2 ;\ | ||
| $(TOOLDIR)/nrmse -t 0.00001 reco1 reco2 ;\ | ||
| rm *.cfl *.ra *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
|
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| # Very slow due to recomposing via mpi 0=> deactivated | ||
| tests/test-pics-noncart-mpi-gridH: bart traj phantom ones pics nrmse | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(TOOLDIR)/traj -r -x128 -y64 -o2 traj ;\ | ||
| $(TOOLDIR)/phantom -s4 -t traj ksp ;\ | ||
| $(TOOLDIR)/phantom -S4 col ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -S pics --no-toeplitz --mpi=8 -S --fista -e -r0.001 -t traj ksp col reco1 ;\ | ||
| $(ROOTDIR)/bart pics --no-toeplitz -S --fista -e -r0.001 -t traj ksp col reco2 ;\ | ||
| $(TOOLDIR)/nrmse -t 0.00001 reco1 reco2 ;\ | ||
| rm *.cfl *.ra *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
|
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| tests/test-pics-cart-slice-batch-mpi: bart $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra $(TESTS_OUT)/img_l2_1.ra $(TESTS_OUT)/img_l2_2.ra $(TESTS_OUT)/img_l2_3.ra $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/ksp_usamp_1.ra $(TESTS_OUT)/ksp_usamp_2.ra $(TESTS_OUT)/ksp_usamp_3.ra ksp_usamp_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens_p ;\ | ||
| mpirun -n 1 $(ROOTDIR)/bart -l 8192 -s 0 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_0 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 $(TESTS_OUT)/img_l2_1.ra img_l2_0 ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -l 8192 -s 1 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_1 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 $(TESTS_OUT)/img_l2_2.ra img_l2_1 ;\ | ||
| mpirun -n 3 $(ROOTDIR)/bart -l 8192 -s 2 pics -S -l2 -r 0.005 -i 3 ksp_usamp_p sens_p img_l2_2 ;\ | ||
| $(ROOTDIR)/bart nrmse -t 2e-5 $(TESTS_OUT)/img_l2_3.ra img_l2_2 ;\ | ||
| rm *.cfl ; rm *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| tests/test-pics-non-cart-batch-mpi: bart $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra | ||
| set -e; mkdir $(TESTS_TMP) ; cd $(TESTS_TMP) ;\ | ||
| $(ROOTDIR)/bart traj -r -D -x 64 -y 32 tr ;\ | ||
| $(ROOTDIR)/bart scale 0.5 tr tr1 ;\ | ||
| $(ROOTDIR)/bart scale 2 tr tr2 ;\ | ||
| $(ROOTDIR)/bart phantom -ttr -k -s 2 ksp_rad ;\ | ||
| $(ROOTDIR)/bart phantom -ttr1 -k -G -s 2 ksp_rad_g ;\ | ||
| $(ROOTDIR)/bart phantom -ttr2 -k -B -s 2 ksp_rad_b ;\ | ||
| $(ROOTDIR)/bart pics -i 3 -t tr ksp_rad $(TESTS_OUT)/sens_1.ra pics_rad ;\ | ||
| $(ROOTDIR)/bart pics -i 3 -t tr1 ksp_rad_g $(TESTS_OUT)/sens_2.ra pics_rad_g ;\ | ||
| $(ROOTDIR)/bart pics -i 3 -t tr2 ksp_rad_b $(TESTS_OUT)/sens_3.ra pics_rad_b ;\ | ||
| $(ROOTDIR)/bart join 13 pics_rad pics_rad_g pics_rad_b pics_rad_ref ;\ | ||
| $(ROOTDIR)/bart join 13 ksp_rad ksp_rad_g ksp_rad_b ksp_rad_p ;\ | ||
| $(ROOTDIR)/bart join 13 $(TESTS_OUT)/sens_1.ra $(TESTS_OUT)/sens_2.ra $(TESTS_OUT)/sens_3.ra sens1_p ;\ | ||
| $(ROOTDIR)/bart join 13 tr tr1 tr2 tr_p ;\ | ||
| mpirun -n 2 $(ROOTDIR)/bart -p 8192 -e 3 pics -i 3 -ttr_p ksp_rad_p sens1_p pics_rad_p ;\ | ||
| $(ROOTDIR)/bart nrmse -t 5e-3 pics_rad_ref pics_rad_p ;\ | ||
| rm *.cfl ; rm *.hdr ; cd .. ; rmdir $(TESTS_TMP) | ||
| touch $@ | ||
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| ifeq ($(MPI),1) | ||
| TESTS_SLOW += tests/test-pics-cart-batch-mpi tests/test-pics-non-cart-batch-mpi tests/test-pics-cart-slice-batch-mpi tests/test-pics-cart-range-batch-mpi | ||
| TESTS_SLOW += tests/test-pics-cart-mpi tests/test-pics-noncart-mpi tests/test-pics-mpi-timedim | ||
| TESTS_SLOW += tests/test-pics-cart-mpi_shared tests/test-pics-cart-mpi-sharedcoil tests/test-pics-cart-mpi-multipledims tests/test-pics-cart-mpi-multipledims-sharedcoil | ||
| endif | ||
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