Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpw612Nk/Rbuild215115d6a273/FLAMES/man/find_variants.Rd:43: unexpected RCODE '(mcols(annotation)[, names_from])) to use for the ', expecting '{'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpw612Nk/Rbuild215115d6a273/FLAMES/man/find_variants.Rd:45: unknown macro '\item'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpw612Nk/Rbuild215115d6a273/FLAMES/man/find_variants.Rd:49: unexpected section header '\value'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpw612Nk/Rbuild215115d6a273/FLAMES/man/find_variants.Rd:55: unexpected section header '\description'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpw612Nk/Rbuild215115d6a273/FLAMES/man/find_variants.Rd:58: unexpected section header '\details'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpw612Nk/Rbuild215115d6a273/FLAMES/man/find_variants.Rd:66: unexpected section header '\examples'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpe3ewfm/R.INSTALL2ea340aad62/FLAMES/man/find_variants.Rd:43: unexpected RCODE '(mcols(annotation)[, names_from])) to use for the ', expecting '{'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpe3ewfm/R.INSTALL2ea340aad62/FLAMES/man/find_variants.Rd:45: unknown macro '\item'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpe3ewfm/R.INSTALL2ea340aad62/FLAMES/man/find_variants.Rd:49: unexpected section header '\value'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpe3ewfm/R.INSTALL2ea340aad62/FLAMES/man/find_variants.Rd:55: unexpected section header '\description'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmprHurql/Rbuild39bed94b411/FLAMES/man/find_variants.Rd:43: unexpected RCODE '(mcols(annotation)[, names_from])) to use for the ', expecting '{'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmprHurql/Rbuild39bed94b411/FLAMES/man/find_variants.Rd:45: unknown macro '\item'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmprHurql/Rbuild39bed94b411/FLAMES/man/find_variants.Rd:49: unexpected section header '\value'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmprHurql/Rbuild39bed94b411/FLAMES/man/find_variants.Rd:55: unexpected section header '\description'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmprHurql/Rbuild39bed94b411/FLAMES/man/find_variants.Rd:58: unexpected section header '\details'

macOS-latest (devel)

/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmprHurql/Rbuild39bed94b411/FLAMES/man/find_variants.Rd:66: unexpected section header '\examples'

macOS-latest (devel)

Found the following significant warnings:

macOS-latest (devel)

checkRd: (-1) bulk_long_pipeline.Rd:77-78: Lost braces in \itemize; meant \describe ?

macOS-latest (devel)

Undocumented arguments in Rd file 'find_variants.Rd'