Merge branch 'devel' of https://github.com/OliverVoogd/FLAMES into yo… #194
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2 errors and 20 warnings
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Run CMD check
R CMD check found WARNINGs
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Process completed with exit code 1.
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmp94L2lR/Rbuild1d5a9dc1f7f/FLAMES/man/find_variants.Rd:43: unexpected RCODE '(mcols(annotation)[, names_from])) to use for the ', expecting '{'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmp94L2lR/Rbuild1d5a9dc1f7f/FLAMES/man/find_variants.Rd:45: unknown macro '\item'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmp94L2lR/Rbuild1d5a9dc1f7f/FLAMES/man/find_variants.Rd:49: unexpected section header '\value'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmp94L2lR/Rbuild1d5a9dc1f7f/FLAMES/man/find_variants.Rd:55: unexpected section header '\description'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmp94L2lR/Rbuild1d5a9dc1f7f/FLAMES/man/find_variants.Rd:58: unexpected section header '\details'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmp94L2lR/Rbuild1d5a9dc1f7f/FLAMES/man/find_variants.Rd:66: unexpected section header '\examples'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpnmo9WV/R.INSTALL2bbf349bbcd8/FLAMES/man/find_variants.Rd:43: unexpected RCODE '(mcols(annotation)[, names_from])) to use for the ', expecting '{'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpnmo9WV/R.INSTALL2bbf349bbcd8/FLAMES/man/find_variants.Rd:45: unknown macro '\item'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpnmo9WV/R.INSTALL2bbf349bbcd8/FLAMES/man/find_variants.Rd:49: unexpected section header '\value'
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Install dependencies pass 2
/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/Rtmpnmo9WV/R.INSTALL2bbf349bbcd8/FLAMES/man/find_variants.Rd:55: unexpected section header '\description'
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/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmpNoFiRR/Rbuild37a244c74d7f/FLAMES/man/find_variants.Rd:43: unexpected RCODE '(mcols(annotation)[, names_from])) to use for the ', expecting '{'
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/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmpNoFiRR/Rbuild37a244c74d7f/FLAMES/man/find_variants.Rd:45: unknown macro '\item'
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/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmpNoFiRR/Rbuild37a244c74d7f/FLAMES/man/find_variants.Rd:49: unexpected section header '\value'
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/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmpNoFiRR/Rbuild37a244c74d7f/FLAMES/man/find_variants.Rd:55: unexpected section header '\description'
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/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmpNoFiRR/Rbuild37a244c74d7f/FLAMES/man/find_variants.Rd:58: unexpected section header '\details'
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/private/var/folders/h1/8hndypj13nsbj5pn4xsnv1tm0000gn/T/RtmpNoFiRR/Rbuild37a244c74d7f/FLAMES/man/find_variants.Rd:66: unexpected section header '\examples'
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Found the following significant warnings:
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checkRd: (-1) bulk_long_pipeline.Rd:77-78: Lost braces in \itemize; meant \describe ?
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Undocumented arguments in Rd file 'find_variants.Rd'
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