v0.4.5

• Output MSI Indeterminate as a possible MSI Class

v0.4.4

• Add visualization tool for microsatellite instances
• Remove requirements on dateutil, torchvision
• Readme and documentation updates

v0.4.3

• Removes dependency on nose for install to alleviate bioconda build issues. Note that this means if you need to run the test suite you must install nose separately
• Pins future dependency on version of python

v0.4.2

• Added conda installation support

v0.4.1

• changes to ensure support for latest python versions
• added --version command line arg
• updated requirements.txt

v0.4.0

• Added MIL attention pooling as an option for increasing the interpretability of the model
• Updated models after further training
• Additional tests added
• Updated pytorch
• Documentation clean up

v0.3.3

• Force coverage param in Model instantiation to integer rather then string

v0.3.2

• Add latest version of the lower coverage (100x combined tumor/normal) model
• fix to address coverage parameter mistakenly interpreted as string

v0.3.1

• Hotfix to address some missing arguments for the last validation testing call in our custom training script

v0.3.0

Merging in the latest MiMSI update, includes:

• fixes and speed improvements to the bam2tensor model
• removal of the giant microsatellites.list file in favor of a smaller one limited to only IMPACT specific regions (significantly speeds up data generation from bam files)
• training/testing improvements and bug fixes
• updated pre-trained model