Started to update pytest to the next version(which is from 8.0.2 to 8…

….1.1). Removed scipy limitation in setup.py.

.github/workflows/build-code.yml

@@ -68,7 +68,7 @@ jobs:
       run: |
         # conda install -yq -c ${CONDA_PREFIX}/conda-bld/ msmbuilder2022
         conda install -yq numdifftools hmmlearn
-        pip install pytest==8.0.2
+        pip install pytest==8.1.1
         mkdir ../../pkgs
         cp -r msmbuilder/tests ../../pkgs
         cd ../../pkgs

msmbuilder/tests/test_libdistance.py

@@ -12,7 +12,7 @@
                   "canberra", "braycurtis", "hamming", "jaccard", "cityblock")
 
 
-def setup():
+def setup_module():
     global X_double, Y_double, X_float, Y_float, X_rmsd, Y_rmsd, X_indices
     X_double = random.randn(10, 2)
     Y_double = random.randn(3, 2)

setup.py

@@ -220,7 +220,7 @@
           'tables',
           'numpydoc',
           'six',
-          'scipy<=1.13.1',
+          'scipy',
           'pyhmc @ git+https://github.com/bojunliu0818/pyhmc.git@bojunliu0818-dev',
       ],
       entry_points={'console_scripts':