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# Sphinx build info version 1 | ||
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. | ||
config: 7a31681a7c78008b4e2dccbaa2239b97 | ||
tags: 645f666f9bcd5a90fca523b33c5a78b7 |
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========= | ||
Functions | ||
========= | ||
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These are all the functions implemented in RETIMAT | ||
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File reading | ||
============ | ||
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.. autofunction:: io.read_vol | ||
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---- | ||
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.. autofunction:: io.read_e2e | ||
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---- | ||
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.. autofunction:: io.read_img | ||
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---- | ||
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.. autofunction:: io.read_bin | ||
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---- | ||
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.. autofunction:: io.read_fda | ||
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---- | ||
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.. autofunction:: io.read_xml_iowa | ||
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---- | ||
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Visualization | ||
============= | ||
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.. autofunction:: visu.generate_report | ||
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---- | ||
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.. autofunction:: visu.plot_sectors | ||
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---- | ||
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.. autofunction:: visu.spider_plot | ||
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---- | ||
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Reflectance | ||
=========== | ||
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.. autofunction:: reflectance.compute_attenuation | ||
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---- | ||
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.. autofunction:: reflectance.image_quality | ||
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---- | ||
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.. autofunction:: reflectance.normalize_reflectance | ||
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---- | ||
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.. autofunction:: reflectance.reflectance_map | ||
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---- | ||
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.. autofunction:: reflectance.stack_bscans | ||
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---- | ||
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Structural analysis | ||
=================== | ||
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.. autofunction:: structure.compute_thickness | ||
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---- | ||
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.. autofunction:: structure.fit_pit_model | ||
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---- | ||
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.. autofunction:: structure.get_morph_params | ||
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---- | ||
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.. autofunction:: structure.smooth_pit | ||
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---- | ||
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Spatial analysis | ||
================ | ||
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.. autofunction:: spatial.find_fovea | ||
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---- | ||
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.. autofunction:: spatial.flip_coordinates | ||
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---- | ||
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.. autofunction:: spatial.get_ascan_coordinates | ||
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---- | ||
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.. autofunction:: spatial.resample_map | ||
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---- | ||
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.. autofunction:: spatial.sectorize_map | ||
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---- | ||
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.. autofunction:: spatial.sectorize_peripapillar | ||
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---- | ||
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Texture analysis | ||
================ | ||
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.. autofunction:: texture.fractal_dimension | ||
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---- | ||
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.. autofunction:: texture.GLCM_features | ||
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---- | ||
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.. autofunction:: texture.lacunarity | ||
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---- | ||
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.. autofunction:: texture.LBP_features | ||
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.. RETIMAT documentation master file, created by | ||
sphinx-quickstart on Mon Apr 10 19:51:04 2023. | ||
You can adapt this file completely to your liking, but it should at least | ||
contain the root `toctree` directive. | ||
Home | ||
==== | ||
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RETIMAT is MATLAB toolbox for retinal OCT image analysis. | ||
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.. image:: https://user-images.githubusercontent.com/50577357/198825276-a70c2cc9-6fd4-408c-8adb-d9f7fcd8d6de.png | ||
:width: 1000 | ||
:alt: Alternative text | ||
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What can I do with RETIMAT | ||
^^^^^^^^^^^^^^^^^^^^^^^^^^ | ||
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* Read OCT files: ``vol``, ``e2e``, ``fda``, ``img``, ``OCTExplorer`` | ||
* Visualize images | ||
* Feature extraction: thickness, foveal pit morphology, texture | ||
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How to install it | ||
^^^^^^^^^^^^^^^^^ | ||
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1. Download the code from `here <https://zenodo.org/record/7313091#.ZDVXQLxBz1s>`_ | ||
2. Unzip the downloaded file | ||
3. Execute the ``startup.m`` script from the main folder | ||
4. Follow the tutorials or reach out for help | ||
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How to use it | ||
^^^^^^^^^^^^^ | ||
.. toctree:: | ||
:hidden: | ||
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self | ||
.. toctree:: | ||
:maxdepth: 2 | ||
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tutorials | ||
functions | ||
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Contact | ||
^^^^^^^ | ||
For help, feedback or collaboration inquiries please contact dromero.research@gmail.com |
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